-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_14698479-14864945

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_35187-T1
Valid prediction for GlimmerHMM_glimmerT_35177-T1
Valid prediction for Augustus_model.g23522.t1
Valid prediction for snap_scaffold_14-snap.3057-T1
Valid prediction for snap_scaffold_14-snap.3059-T1
Valid prediction for CodingQuarry_transcript_15940-T1
Valid prediction for pasa_asmbl_12560.p1
Valid prediction for GlimmerHMM_glimmerT_35175-T1
Valid prediction for snap_scaffold_14-snap.3060-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.3030-T1
Valid prediction for snap_scaffold_14-snap.3068-T1
Valid prediction for snap_scaffold_14-snap.3037-T1
Valid prediction for GlimmerHMM_glimmerT_35184-T1
Valid prediction for Augustus_model.g23521.t1
Valid prediction for HiQ_model.g23525.t1
Valid prediction for GlimmerHMM_glimmerT_35188-T1
Valid prediction for snap_scaffold_14-snap.3034-T1
Valid prediction for snap_scaffold_14-snap.3062-T1
Valid prediction for snap_scaffold_14-snap.3028-T1
Valid prediction for snap_scaffold_14-snap.3041-T1
Valid prediction for snap_scaffold_14-snap.3044-T1
Valid prediction for snap_scaffold_14-snap.3035-T1
Valid prediction for snap_scaffold_14-snap.3048-T1
Valid prediction for GlimmerHMM_glimmerT_35170-T1
Valid prediction for GlimmerHMM_glimmerT_35178-T1
Valid prediction for GlimmerHMM_glimmerT_35182-T1
Valid prediction for GlimmerHMM_glimmerT_35171-T1
Valid prediction for snap_scaffold_14-snap.3046-T1
Valid prediction for snap_scaffold_14-snap.3033-T1
Valid prediction for Augustus_model.g23524.t1
Valid prediction for snap_scaffold_14-snap.3027-T1
Valid prediction for Augustus_model.g23518.t1
Valid prediction for GlimmerHMM_glimmerT_35174-T1
Valid prediction for GlimmerHMM_glimmerT_35185-T1
Valid prediction for snap_scaffold_14-snap.3029-T1
Valid prediction for snap_scaffold_14-snap.3064-T1
Valid prediction for snap_scaffold_14-snap.3053-T1
Valid prediction for snap_scaffold_14-snap.3066-T1
Valid prediction for Augustus_model.g23517.t1
Valid prediction for snap_scaffold_14-snap.3040-T1
Couldn't classify 25616, 26513
Sorry, prediction pasa_asmbl_12557.p1 fails validation.
(ATG)	 AG	24943-24995	GT	AAG
(GAA)	 AG	25616-26513	AA	AGA
-recovered pasa_asmbl_12557.p1, initial, 24943, 24995
-recovered pasa_asmbl_12557.p1, internal, 24943, 24995

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_35181-T1
Valid prediction for GlimmerHMM_glimmerT_35176-T1
Valid prediction for Augustus_model.g23529.t1
Couldn't classify 109606, 110310
Sorry, prediction pasa_asmbl_13699.p1 fails validation.
(GGA)	 AT	109606-110310	AG	GAA
Valid prediction for snap_scaffold_14-snap.3054-T1
Valid prediction for snap_scaffold_14-snap.3047-T1
Valid prediction for snap_scaffold_14-snap.3061-T1
Valid prediction for GlimmerHMM_glimmerT_35173-T1
Valid prediction for snap_scaffold_14-snap.3058-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.3036-T1
Valid prediction for snap_scaffold_14-snap.3055-T1
Valid prediction for snap_scaffold_14-snap.3069-T1
Valid prediction for snap_scaffold_14-snap.3065-T1
Valid prediction for Augustus_model.g23528.t1
Valid prediction for GlimmerHMM_glimmerT_35189-T1
Valid prediction for Augustus_model.g23519.t1
Valid prediction for GlimmerHMM_glimmerT_35172-T1
Valid prediction for GlimmerHMM_glimmerT_35186-T1
Valid prediction for GlimmerHMM_glimmerT_35180-T1
Valid prediction for snap_scaffold_14-snap.3051-T1
Valid prediction for snap_scaffold_14-snap.3050-T1
Valid prediction for snap_scaffold_14-snap.3070-T1
Valid prediction for snap_scaffold_14-snap.3045-T1
Valid prediction for snap_scaffold_14-snap.3067-T1
Valid prediction for Augustus_model.g23526.t1
Valid prediction for Augustus_model.g23520.t1
Valid prediction for Augustus_model.g23523.t1
Valid prediction for snap_scaffold_14-snap.3031-T1
Valid prediction for snap_scaffold_14-snap.3063-T1
Valid prediction for GlimmerHMM_glimmerT_35183-T1
Valid prediction for GlimmerHMM_glimmerT_35179-T1
Valid prediction for snap_scaffold_14-snap.3043-T1
Valid prediction for snap_scaffold_14-snap.3052-T1
Valid prediction for snap_scaffold_14-snap.3039-T1
Valid prediction for Augustus_model.g23527.t1
Valid prediction for snap_scaffold_14-snap.3032-T1
Valid prediction for snap_scaffold_14-snap.3049-T1
Valid prediction for snap_scaffold_14-snap.3038-T1
Valid prediction for snap_scaffold_14-snap.3042-T1
Valid prediction for snap_scaffold_14-snap.3056-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21596, rend_intergenic: 11110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53203, rend_intergenic: 49836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75869, rend_intergenic: 67016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78503, rend_intergenic: 76410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83711, rend_intergenic: 78671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88960, rend_intergenic: 84488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106363, rend_intergenic: 91630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108962, rend_intergenic: 106633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120469, rend_intergenic: 118920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124681, rend_intergenic: 120788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137961, rend_intergenic: 136403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146251, rend_intergenic: 143476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159468, rend_intergenic: 156271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166467
-exon list size: 283


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.6    
6.0    
6.3    
6.7    
7.0    
7.4    
7.7    
8.1    
8.4    
8.8    
9.1    
9.5    
9.8    
10.2    
10.5    
10.9    
11.2    
11.6    
11.9    
12.3    
12.6    
13.0    
13.3    
13.7    
14.0    
14.4    
14.7    
15.1    
15.4    
15.8    
16.1    
16.5    
16.8    
17.2    
17.5    
17.9    
18.2    
18.6    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.4    
21.8    
22.1    
22.5    
22.8    
23.2    
23.5    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.7    
27.0    
27.4    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.8    
30.2    
30.5    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.1    
35.4    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.9    
38.2    
38.6    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.4    
41.8    
42.1    
42.5    
42.8    
43.2    
43.5    
43.9    
44.2    
44.6    
44.9    
45.3    
45.6    
46.0    
46.3    
46.7    
47.0    
47.4    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.6    
53.0    
53.3    
53.7    
54.0    
54.4    
54.7    
55.1    
55.4    
55.8    
56.1    
56.5    
56.8    
57.2    
57.5    
57.9    
58.2    
58.6    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.4    
61.8    
62.1    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.6    
64.9    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.5    
69.8    
70.2    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.6    
73.0    
73.3    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.5    
76.8    
77.2    
77.5    
77.9    
78.2    
78.6    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.4    
81.8    
82.1    
82.5    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
84.9    
85.3    
85.6    
86.0    
86.3    
86.7    
87.0    
87.4    
87.7    
88.1    
88.4    
88.8    
89.1    
89.5    
89.8    
90.2    
90.5    
90.9    
91.2    
91.6    
91.9    
92.3    
92.6    
93.0    
93.3    
93.7    
94.0    
94.4    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 21596, rend_intergenic: 11110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53203, rend_intergenic: 49836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75869, rend_intergenic: 67016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78503, rend_intergenic: 76410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83711, rend_intergenic: 78671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88960, rend_intergenic: 84488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106363, rend_intergenic: 91630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108962, rend_intergenic: 106633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120469, rend_intergenic: 118920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124681, rend_intergenic: 120788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137961, rend_intergenic: 136403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146251, rend_intergenic: 143476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159468, rend_intergenic: 156271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support