-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_14030799-14149964

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g23461.t1
Couldn't classify 101043, 101108
Sorry, prediction pasa_asmbl_12522.p1 fails validation.
(ACA)	 AA	101043-101108	GT	TGG
(GAT)	 AG	101767-101843	GT	AAG
(ACA)	 AG	101939-102083	GT	AGG
(AAC)	 AG	102416-102505	GT	AGG
(GGG)	 AG	102855-102980	GT	TGG
(GCT)	 AG	103069-103197	GT	AGG
(GCC)	 AG	103384-103410	AG	AGA
-recovered pasa_asmbl_12522.p1, terminal, 103384, 103410
-recovered pasa_asmbl_12522.p1, internal, 101767, 101843
-recovered pasa_asmbl_12522.p1, internal, 101939, 102083
-recovered pasa_asmbl_12522.p1, internal, 102416, 102505
-recovered pasa_asmbl_12522.p1, internal, 102855, 102980
-recovered pasa_asmbl_12522.p1, internal, 103069, 103197
Valid prediction for GlimmerHMM_glimmerT_35084-T1
Valid prediction for snap_scaffold_14-snap.2883-T1
Valid prediction for GlimmerHMM_glimmerT_35074-T1
Valid prediction for GlimmerHMM_glimmerT_35083-T1
Valid prediction for snap_scaffold_14-snap.2889-T1
Valid prediction for snap_scaffold_14-snap.2901-T1
Valid prediction for CodingQuarry_transcript_15929-T1
Valid prediction for Augustus_model.g23465.t1
Valid prediction for HiQ_model.g23466.t1
Valid prediction for Augustus_model.g23458.t1
Valid prediction for GlimmerHMM_glimmerT_35071-T1
Valid prediction for pasa_asmbl_12519.p1
Valid prediction for snap_scaffold_14-snap.2893-T1
Valid prediction for GlimmerHMM_glimmerT_35080-T1
Valid prediction for GlimmerHMM_glimmerT_35077-T1
Valid prediction for GlimmerHMM_glimmerT_35086-T1
Valid prediction for snap_scaffold_14-snap.2900-T1
Valid prediction for Augustus_model.g23454.t1
Valid prediction for GlimmerHMM_glimmerT_35082-T1
Valid prediction for snap_scaffold_14-snap.2882-T1
Valid prediction for GlimmerHMM_glimmerT_35085-T1
Valid prediction for snap_scaffold_14-snap.2896-T1
Valid prediction for Augustus_model.g23467.t1
Valid prediction for snap_scaffold_14-snap.2878-T1
Valid prediction for snap_scaffold_14-snap.2902-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g23463.t1
Valid prediction for snap_scaffold_14-snap.2899-T1
Valid prediction for snap_scaffold_14-snap.2903-T1
Valid prediction for snap_scaffold_14-snap.2884-T1
Couldn't classify 99964, 100365
Sorry, prediction pasa_asmbl_12521.p1 fails validation.
(ACC)	 TC	99964-100365	TT	AAT
Valid prediction for HiQ_model.g23464.t1
Valid prediction for Augustus_model.g23459.t1
Valid prediction for snap_scaffold_14-snap.2888-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_13675.p1
Valid prediction for GlimmerHMM_glimmerT_35073-T1
Valid prediction for GlimmerHMM_glimmerT_35081-T1
Valid prediction for Augustus_model.g23460.t1
Valid prediction for pasa_asmbl_13671.p1
Couldn't classify 42685, 42744
Couldn't classify 44115, 44524
Sorry, prediction pasa_asmbl_13678.p1 fails validation.
(TGT)	 GC	42685-42744	GT	AGG
(ACT)	 AG	43458-43516	GT	AGG
(GTC)	 AG	43641-43789	GT	AGG
(GTG)	 AG	44115-44524	AG	AGA
-recovered pasa_asmbl_13678.p1, internal, 43458, 43516
-recovered pasa_asmbl_13678.p1, internal, 43641, 43789
Valid prediction for Augustus_model.g23453.t1
Valid prediction for snap_scaffold_14-snap.2881-T1
Couldn't classify 42051, 42389
Sorry, prediction pasa_asmbl_13680.p2 fails validation.
(GAA)	 CA	42051-42389	GG	CAG
Valid prediction for snap_scaffold_14-snap.2890-T1
Valid prediction for Augustus_model.g23456.t1
Couldn't classify 86959, 87164
Sorry, prediction pasa_asmbl_13673.p1 fails validation.
(ATG)	 TT	83312-83343	GT	AAG
(GGT)	 AG	84943-85093	GT	AGG
(GTC)	 AG	85987-86095	GT	AGG
(GGA)	 AG	86474-86596	GT	AGG
(GAA)	 AG	86959-87164	CT	CCC
-recovered pasa_asmbl_13673.p1, initial, 83312, 83343
-recovered pasa_asmbl_13673.p1, internal, 84943, 85093
-recovered pasa_asmbl_13673.p1, internal, 85987, 86095
-recovered pasa_asmbl_13673.p1, internal, 86474, 86596
Valid prediction for Augustus_model.g23462.t1
Valid prediction for HiQ_model.g23455.t1
Valid prediction for snap_scaffold_14-snap.2880-T1
Valid prediction for snap_scaffold_14-snap.2897-T1
Valid prediction for HiQ_model.g23457.t1
Valid prediction for GlimmerHMM_glimmerT_35076-T1
Valid prediction for snap_scaffold_14-snap.2892-T1
Valid prediction for GlimmerHMM_glimmerT_35072-T1
Valid prediction for snap_scaffold_14-snap.2879-T1
Valid prediction for snap_scaffold_14-snap.2898-T1
Valid prediction for CodingQuarry_transcript_15928-T1
Valid prediction for CodingQuarry_transcript_15927-T1
Valid prediction for snap_scaffold_14-snap.2886-T1
Valid prediction for snap_scaffold_14-snap.2887-T1
Valid prediction for GlimmerHMM_glimmerT_35078-T1
Valid prediction for GlimmerHMM_glimmerT_35075-T1
Valid prediction for snap_scaffold_14-snap.2895-T1
Valid prediction for snap_scaffold_14-snap.2894-T1
Valid prediction for snap_scaffold_14-snap.2891-T1
Valid prediction for GlimmerHMM_glimmerT_35079-T1
Valid prediction for snap_scaffold_14-snap.2885-T1
Valid prediction for snap_scaffold_14-snap.2904-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 37230, rend_intergenic: 31976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59055, rend_intergenic: 56633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71698, rend_intergenic: 69064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84293, rend_intergenic: 78930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90048, rend_intergenic: 87538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93772, rend_intergenic: 90310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118889, rend_intergenic: 109710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 119166
-exon list size: 258


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 37230, rend_intergenic: 31976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59055, rend_intergenic: 56633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71698, rend_intergenic: 69064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84293, rend_intergenic: 78930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90048, rend_intergenic: 87538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93772, rend_intergenic: 90310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118889, rend_intergenic: 109710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support