-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_1352840-1618420

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_15564-T1
Valid prediction for GlimmerHMM_glimmerT_33293-T1
Valid prediction for snap_scaffold_14-snap.255-T1
Valid prediction for snap_scaffold_14-snap.236-T1
Valid prediction for GlimmerHMM_glimmerT_33299-T1
Valid prediction for Augustus_model.g22254.t1
Valid prediction for GlimmerHMM_glimmerT_33275-T1
Valid prediction for CodingQuarry_transcript_15558-T1
Valid prediction for snap_scaffold_14-snap.242-T1
Valid prediction for Augustus_model.g22245.t1
Valid prediction for GlimmerHMM_glimmerT_33298-T1
Valid prediction for pasa_asmbl_11830.p1
Valid prediction for snap_scaffold_14-snap.254-T1
Valid prediction for CodingQuarry_transcript_15563-T1
Valid prediction for Augustus_model.g22263.t1
Valid prediction for GlimmerHMM_glimmerT_33297-T1
Valid prediction for Augustus_model.g22244.t1
Valid prediction for GlimmerHMM_glimmerT_33277-T1
Valid prediction for snap_scaffold_14-snap.229-T1
Valid prediction for Augustus_model.g22246.t1
Valid prediction for GlimmerHMM_glimmerT_33294-T1
Valid prediction for Augustus_model.g22249.t1
Valid prediction for snap_scaffold_14-snap.233-T1
Valid prediction for snap_scaffold_14-snap.256-T1
Valid prediction for snap_scaffold_14-snap.243-T1
Valid prediction for GlimmerHMM_glimmerT_33278-T1
Valid prediction for GlimmerHMM_glimmerT_33287-T1
Valid prediction for GlimmerHMM_glimmerT_33295-T1
Valid prediction for Augustus_model.g22261.t1
Valid prediction for snap_scaffold_14-snap.228-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.231-T1
Valid prediction for snap_scaffold_14-snap.247-T1
Valid prediction for GlimmerHMM_glimmerT_33283-T1
Valid prediction for HiQ_model.g22266.t1
Valid prediction for Augustus_model.g22241.t1
Valid prediction for GlimmerHMM_glimmerT_33290-T1
Valid prediction for Augustus_model.g22255.t1
Valid prediction for snap_scaffold_14-snap.234-T1
Valid prediction for GlimmerHMM_glimmerT_33273-T1
Valid prediction for GlimmerHMM_glimmerT_33281-T1
Valid prediction for snap_scaffold_14-snap.241-T1
Valid prediction for Augustus_model.g22251.t1
Valid prediction for GlimmerHMM_glimmerT_33284-T1
Couldn't classify 99789, 100376
Sorry, prediction pasa_asmbl_12886.p1 fails validation.
(AGT)	 CC	99789-100376	AT	GAA
Valid prediction for Augustus_model.g22262.t1
Valid prediction for GlimmerHMM_glimmerT_33302-T1
Valid prediction for GlimmerHMM_glimmerT_33280-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.223-T1
Valid prediction for Augustus_model.g22259.t1
Valid prediction for GlimmerHMM_glimmerT_33286-T1
Couldn't classify 205796, 205941
Sorry, prediction pasa_asmbl_11825.p1 fails validation.
(CAA)	 TA	205796-205941	GT	AGG
(GCT)	 AG	206043-206230	GT	TGG
(GTG)	 AG	206312-206465	GT	GGG
(GAG)	 AG	206608-206671	GT	AGG
(TAT)	 AG	206766-206858	GT	AGG
(GCT)	 AG	207049-207210	CC	AGC
-recovered pasa_asmbl_11825.p1, terminal, 207049, 207210
-recovered pasa_asmbl_11825.p1, internal, 206043, 206230
-recovered pasa_asmbl_11825.p1, internal, 206312, 206465
-recovered pasa_asmbl_11825.p1, internal, 206608, 206671
-recovered pasa_asmbl_11825.p1, internal, 206766, 206858
Valid prediction for snap_scaffold_14-snap.248-T1
Valid prediction for GlimmerHMM_glimmerT_33288-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33289-T1
Valid prediction for Augustus_model.g22247.t1
Valid prediction for snap_scaffold_14-snap.222-T1
Valid prediction for pasa_asmbl_12895.p1
Valid prediction for snap_scaffold_14-snap.219-T1
Valid prediction for Augustus_model.g22250.t1
Valid prediction for snap_scaffold_14-snap.249-T1
Valid prediction for HiQ_model.g22256.t1
Valid prediction for CodingQuarry_transcript_15562-T1
Valid prediction for HiQ_model.g22260.t1
Valid prediction for snap_scaffold_14-snap.216-T1
Valid prediction for snap_scaffold_14-snap.245-T1
Valid prediction for snap_scaffold_14-snap.237-T1
Valid prediction for snap_scaffold_14-snap.227-T1
Valid prediction for GlimmerHMM_glimmerT_33274-T1
Valid prediction for snap_scaffold_14-snap.251-T1
Couldn't classify 200776, 200859
Couldn't classify 207133, 207432
Sorry, prediction pasa_asmbl_12883.p1 fails validation.
(AGC)	 GG	200776-200859	GT	TGG
(ATA)	 AG	201623-201773	GT	AGG
(ATC)	 AG	201980-202068	GT	ATG
(CTC)	 AG	204918-205041	GT	TGG
(GTG)	 AG	205160-205356	GT	TGG
(GGT)	 AG	205810-205989	GT	CGG
(GTT)	 AG	207133-207432	TA	GTT
-recovered pasa_asmbl_12883.p1, internal, 201623, 201773
-recovered pasa_asmbl_12883.p1, internal, 201980, 202068
-recovered pasa_asmbl_12883.p1, internal, 204918, 205041
-recovered pasa_asmbl_12883.p1, internal, 205160, 205356
-recovered pasa_asmbl_12883.p1, internal, 205810, 205989
Valid prediction for snap_scaffold_14-snap.224-T1
Valid prediction for snap_scaffold_14-snap.235-T1
Valid prediction for GlimmerHMM_glimmerT_33296-T1
Valid prediction for snap_scaffold_14-snap.250-T1
Valid prediction for GlimmerHMM_glimmerT_33270-T1
Valid prediction for pasa_asmbl_12891.p1
Valid prediction for snap_scaffold_14-snap.240-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.244-T1
Valid prediction for snap_scaffold_14-snap.246-T1
Valid prediction for GlimmerHMM_glimmerT_33285-T1
Valid prediction for Augustus_model.g22238.t1
Valid prediction for pasa_asmbl_12881.p1
Valid prediction for Augustus_model.g22242.t1
Valid prediction for snap_scaffold_14-snap.253-T1
Valid prediction for Augustus_model.g22252.t1
Valid prediction for CodingQuarry_transcript_15557-T1
Valid prediction for snap_scaffold_14-snap.232-T1
Valid prediction for pasa_asmbl_12878.p1
Valid prediction for Augustus_model.g22258.t1
Valid prediction for Augustus_model.g22239.t1
Valid prediction for snap_scaffold_14-snap.220-T1
Couldn't classify 208774, 208816
Sorry, prediction pasa_asmbl_12882.p1 fails validation.
(CAT)	 CG	208774-208816	GT	AGG
(GTA)	 AG	211510-211649	GT	AGG
(GTG)	 AG	212248-212347	GT	AGG
(CCT)	 AG	213809-214080	GG	GAG
-recovered pasa_asmbl_12882.p1, terminal, 213809, 214080
-recovered pasa_asmbl_12882.p1, internal, 211510, 211649
-recovered pasa_asmbl_12882.p1, internal, 212248, 212347
Valid prediction for snap_scaffold_14-snap.239-T1
Valid prediction for snap_scaffold_14-snap.221-T1
Valid prediction for GlimmerHMM_glimmerT_33276-T1
Valid prediction for Augustus_model.g22253.t1
Valid prediction for GlimmerHMM_glimmerT_33291-T1
Valid prediction for GlimmerHMM_glimmerT_33271-T1
Valid prediction for Augustus_model.g22240.t1
Valid prediction for snap_scaffold_14-snap.218-T1
Valid prediction for GlimmerHMM_glimmerT_33300-T1
Valid prediction for GlimmerHMM_glimmerT_33292-T1
Valid prediction for GlimmerHMM_glimmerT_33279-T1
Valid prediction for HiQ_model.g22265.t1
Valid prediction for snap_scaffold_14-snap.217-T1
Valid prediction for Augustus_model.g22257.t1
Valid prediction for HiQ_model.g22248.t1
Valid prediction for CodingQuarry_transcript_15556-T1
Valid prediction for HiQ_model.g22264.t1
Valid prediction for GlimmerHMM_glimmerT_33272-T1
Valid prediction for GlimmerHMM_glimmerT_33301-T1
Valid prediction for snap_scaffold_14-snap.226-T1
Valid prediction for CodingQuarry_transcript_15559-T1
Valid prediction for pasa_asmbl_12904.p1
Valid prediction for snap_scaffold_14-snap.238-T1
Valid prediction for GlimmerHMM_glimmerT_33282-T1
Valid prediction for CodingQuarry_transcript_15560-T1
Valid prediction for pasa_asmbl_12887.p1
Valid prediction for snap_scaffold_14-snap.252-T1
Valid prediction for CodingQuarry_transcript_15555-T1
Valid prediction for snap_scaffold_14-snap.230-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_15561-T1
Valid prediction for Augustus_model.g22243.t1
Valid prediction for snap_scaffold_14-snap.225-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 219999, rend_intergenic: 216025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 265581
-exon list size: 329


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 219999, rend_intergenic: 216025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support