-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_12808710-12911528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.2630-T1
Valid prediction for Augustus_model.g23347.t1
Valid prediction for GlimmerHMM_glimmerT_34906-T1
Valid prediction for snap_scaffold_14-snap.2636-T1
Valid prediction for pasa_asmbl_12740.p1
Valid prediction for CodingQuarry_transcript_15898-T1
Valid prediction for snap_scaffold_14-snap.2635-T1
Valid prediction for snap_scaffold_14-snap.2624-T1
Valid prediction for Augustus_model.g23341.t1
Valid prediction for snap_scaffold_14-snap.2623-T1
Valid prediction for snap_scaffold_14-snap.2617-T1
Valid prediction for GlimmerHMM_glimmerT_34899-T1
Valid prediction for snap_scaffold_14-snap.2626-T1
Valid prediction for GlimmerHMM_glimmerT_34896-T1
Valid prediction for snap_scaffold_14-snap.2615-T1
Valid prediction for snap_scaffold_14-snap.2633-T1
Valid prediction for snap_scaffold_14-snap.2625-T1
Valid prediction for GlimmerHMM_glimmerT_34905-T1
Valid prediction for snap_scaffold_14-snap.2621-T1
Valid prediction for GlimmerHMM_glimmerT_34902-T1
Valid prediction for snap_scaffold_14-snap.2612-T1
Valid prediction for HiQ_model.g23343.t1
Valid prediction for CodingQuarry_transcript_15894-T1
Valid prediction for GlimmerHMM_glimmerT_34894-T1
Valid prediction for pasa_asmbl_12449.p1
Valid prediction for GlimmerHMM_glimmerT_34901-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.2611-T1
Valid prediction for snap_scaffold_14-snap.2627-T1
Valid prediction for GlimmerHMM_glimmerT_34903-T1
Valid prediction for Augustus_model.g23344.t1
Valid prediction for snap_scaffold_14-snap.2616-T1
Valid prediction for GlimmerHMM_glimmerT_34893-T1
Valid prediction for pasa_asmbl_13616.p1
Valid prediction for snap_scaffold_14-snap.2620-T1
Valid prediction for CodingQuarry_transcript_15896-T1
Valid prediction for GlimmerHMM_glimmerT_34895-T1
Valid prediction for snap_scaffold_14-snap.2631-T1
Valid prediction for GlimmerHMM_glimmerT_34900-T1
Valid prediction for Augustus_model.g23345.t1
Valid prediction for snap_scaffold_14-snap.2619-T1
Valid prediction for CodingQuarry_transcript_15897-T1
Valid prediction for GlimmerHMM_glimmerT_34904-T1
Valid prediction for CodingQuarry_transcript_15893-T1
Valid prediction for CodingQuarry_transcript_15895-T1
Valid prediction for snap_scaffold_14-snap.2634-T1
Valid prediction for GlimmerHMM_glimmerT_34898-T1
Valid prediction for HiQ_model.g23342.t1
Valid prediction for snap_scaffold_14-snap.2622-T1
Valid prediction for snap_scaffold_14-snap.2628-T1
Valid prediction for GlimmerHMM_glimmerT_34897-T1
Valid prediction for snap_scaffold_14-snap.2614-T1
Valid prediction for snap_scaffold_14-snap.2618-T1
Valid prediction for pasa_asmbl_13610.p1
Couldn't classify 61774, 62044
Sorry, prediction pasa_asmbl_13623.p2 fails validation.
(CCA)	 AG	61774-62044	GT	GGG
(GGG)	 AG	62337-62491	CG	AAC
-recovered pasa_asmbl_13623.p2, terminal, 62337, 62491
-recovered pasa_asmbl_13623.p2, internal, 61774, 62044
Valid prediction for snap_scaffold_14-snap.2613-T1
Valid prediction for snap_scaffold_14-snap.2632-T1
Valid prediction for snap_scaffold_14-snap.2629-T1
Couldn't classify 74963, 75147
Sorry, prediction pasa_asmbl_13620.p1 fails validation.
(GCC)	 CA	74963-75147	GT	AAG
(GAG)	 AG	75532-75736	GC	AGG
-recovered pasa_asmbl_13620.p1, terminal, 75532, 75736
-recovered pasa_asmbl_13620.p1, internal, 75532, 75736
Valid prediction for Augustus_model.g23346.t1
Valid prediction for HiQ_model.g23340.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 58277, rend_intergenic: 53133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74292, rend_intergenic: 58491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79841, rend_intergenic: 75959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84787, rend_intergenic: 83500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100170, rend_intergenic: 94577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 102819
-exon list size: 203


building trellis

0.5    
1.0    
1.5    
2.0    
2.4    
2.9    
3.4    
3.9    
4.4    
4.9    
5.4    
5.9    
6.3    
6.8    
7.3    
7.8    
8.3    
8.8    
9.3    
9.8    
10.2    
10.7    
11.2    
11.7    
12.2    
12.7    
13.2    
13.7    
14.1    
14.6    
15.1    
15.6    
16.1    
16.6    
17.1    
17.6    
18.0    
18.5    
19.0    
19.5    
20.0    
20.5    
21.0    
21.5    
22.0    
22.4    
22.9    
23.4    
23.9    
24.4    
24.9    
25.4    
25.9    
26.3    
26.8    
27.3    
27.8    
28.3    
28.8    
29.3    
29.8    
30.2    
30.7    
31.2    
31.7    
32.2    
32.7    
33.2    
33.7    
34.1    
34.6    
35.1    
35.6    
36.1    
36.6    
37.1    
37.6    
38.0    
38.5    
39.0    
39.5    
40.0    
40.5    
41.0    
41.5    
42.0    
42.4    
42.9    
43.4    
43.9    
44.4    
44.9    
45.4    
45.9    
46.3    
46.8    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.2    
53.7    
54.1    
54.6    
55.1    
55.6    
56.1    
56.6    
57.1    
57.6    
58.0    
58.5    
59.0    
59.5    
60.0    
60.5    
61.0    
61.5    
62.0    
62.4    
62.9    
63.4    
63.9    
64.4    
64.9    
65.4    
65.9    
66.3    
66.8    
67.3    
67.8    
68.3    
68.8    
69.3    
69.8    
70.2    
70.7    
71.2    
71.7    
72.2    
72.7    
73.2    
73.7    
74.1    
74.6    
75.1    
75.6    
76.1    
76.6    
77.1    
77.6    
78.0    
78.5    
79.0    
79.5    
80.0    
80.5    
81.0    
81.5    
82.0    
82.4    
82.9    
83.4    
83.9    
84.4    
84.9    
85.4    
85.9    
86.3    
86.8    
87.3    
87.8    
88.3    
88.8    
89.3    
89.8    
90.2    
90.7    
91.2    
91.7    
92.2    
92.7    
93.2    
93.7    
94.1    
94.6    
95.1    
95.6    
96.1    
96.6    
97.1    
97.6    
98.0    
98.5    
99.0    
99.5    
-found 15 predictions from path traversal
Error with prediction: snap lend_intergenic: 58277, rend_intergenic: 53133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74292, rend_intergenic: 58491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79841, rend_intergenic: 75959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84787, rend_intergenic: 83500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100170, rend_intergenic: 94577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support