-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_12354727-12547502 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g23299.t1 Valid prediction for snap_scaffold_14-snap.2550-T1 Valid prediction for snap_scaffold_14-snap.2547-T1 Valid prediction for snap_scaffold_14-snap.2549-T1 Valid prediction for snap_scaffold_14-snap.2545-T1 Valid prediction for snap_scaffold_14-snap.2537-T1 Valid prediction for GlimmerHMM_glimmerT_34847-T1 Valid prediction for snap_scaffold_14-snap.2548-T1 Valid prediction for snap_scaffold_14-snap.2540-T1 Valid prediction for snap_scaffold_14-snap.2560-T1 Valid prediction for Augustus_model.g23293.t1 Valid prediction for snap_scaffold_14-snap.2569-T1 Valid prediction for Augustus_model.g23306.t1 Valid prediction for snap_scaffold_14-snap.2561-T1 Valid prediction for GlimmerHMM_glimmerT_34843-T1 Valid prediction for GlimmerHMM_glimmerT_34844-T1 Valid prediction for Augustus_model.g23300.t1 Valid prediction for Augustus_model.g23302.t1 Valid prediction for GlimmerHMM_glimmerT_34859-T1 Valid prediction for GlimmerHMM_glimmerT_34848-T1 Valid prediction for Augustus_model.g23314.t1 Valid prediction for GlimmerHMM_glimmerT_34849-T1 Valid prediction for snap_scaffold_14-snap.2554-T1 Valid prediction for snap_scaffold_14-snap.2534-T1 Valid prediction for Augustus_model.g23297.t1 Valid prediction for snap_scaffold_14-snap.2559-T1 Valid prediction for snap_scaffold_14-snap.2566-T1 Valid prediction for GlimmerHMM_glimmerT_34839-T1 Valid prediction for GlimmerHMM_glimmerT_34846-T1 Valid prediction for Augustus_model.g23310.t1 Valid prediction for snap_scaffold_14-snap.2536-T1 Valid prediction for Augustus_model.g23309.t1 Valid prediction for GlimmerHMM_glimmerT_34836-T1 Valid prediction for snap_scaffold_14-snap.2562-T1 Valid prediction for GlimmerHMM_glimmerT_34862-T1 Valid prediction for GlimmerHMM_glimmerT_34835-T1 Valid prediction for Augustus_model.g23294.t1 Valid prediction for GlimmerHMM_glimmerT_34861-T1 Valid prediction for snap_scaffold_14-snap.2556-T1 Valid prediction for snap_scaffold_14-snap.2541-T1 Valid prediction for GlimmerHMM_glimmerT_34840-T1 Valid prediction for snap_scaffold_14-snap.2542-T1 Valid prediction for snap_scaffold_14-snap.2533-T1 Valid prediction for GlimmerHMM_glimmerT_34853-T1 Valid prediction for GlimmerHMM_glimmerT_34852-T1 Valid prediction for Augustus_model.g23311.t1 Valid prediction for Augustus_model.g23303.t1 Valid prediction for snap_scaffold_14-snap.2529-T1 Valid prediction for GlimmerHMM_glimmerT_34858-T1 Valid prediction for snap_scaffold_14-snap.2565-T1 Valid prediction for GlimmerHMM_glimmerT_34833-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34865-T1 Valid prediction for GlimmerHMM_glimmerT_34837-T1 Valid prediction for Augustus_model.g23313.t1 Valid prediction for snap_scaffold_14-snap.2535-T1 Valid prediction for GlimmerHMM_glimmerT_34866-T1 Couldn't classify 34617, 35081 Sorry, prediction pasa_asmbl_12427.p1 fails validation. (CTC) TC 34617-35081 GT GAG Valid prediction for Augustus_model.g23307.t1 Valid prediction for Augustus_model.g23305.t1 Valid prediction for snap_scaffold_14-snap.2555-T1 Valid prediction for GlimmerHMM_glimmerT_34864-T1 Valid prediction for Augustus_model.g23295.t1 Valid prediction for GlimmerHMM_glimmerT_34850-T1 Valid prediction for GlimmerHMM_glimmerT_34860-T1 Valid prediction for snap_scaffold_14-snap.2531-T1 Valid prediction for CodingQuarry_transcript_15881-T1 Valid prediction for Augustus_model.g23301.t1 Valid prediction for pasa_asmbl_13574.p1 Valid prediction for GlimmerHMM_glimmerT_34863-T1 Valid prediction for GlimmerHMM_glimmerT_34854-T1 Valid prediction for GlimmerHMM_glimmerT_34845-T1 Valid prediction for Augustus_model.g23317.t1 Valid prediction for snap_scaffold_14-snap.2546-T1 Valid prediction for Augustus_model.g23316.t1 Valid prediction for GlimmerHMM_glimmerT_34855-T1 Valid prediction for snap_scaffold_14-snap.2544-T1 Valid prediction for GlimmerHMM_glimmerT_34842-T1 Valid prediction for snap_scaffold_14-snap.2568-T1 Valid prediction for HiQ_model.g23298.t1 Valid prediction for GlimmerHMM_glimmerT_34838-T1 Valid prediction for Augustus_model.g23304.t1 Valid prediction for snap_scaffold_14-snap.2532-T1 Valid prediction for snap_scaffold_14-snap.2538-T1 Valid prediction for Augustus_model.g23315.t1 Valid prediction for GlimmerHMM_glimmerT_34851-T1 Valid prediction for Augustus_model.g23296.t1 Valid prediction for snap_scaffold_14-snap.2553-T1 Valid prediction for GlimmerHMM_glimmerT_34834-T1 Valid prediction for snap_scaffold_14-snap.2543-T1 Valid prediction for snap_scaffold_14-snap.2530-T1 Couldn't classify 41317, 41394 Sorry, prediction pasa_asmbl_13570.p1 fails validation. (TGT) CC 41317-41394 GT AGG (GCG) AG 41678-41780 GT TGG (GTC) AG 43123-43191 GT AGG (AGT) AG 43307-43468 GT CTG (TCA) AG 43797-43999 GT AGG (GCT) AG 44532-44660 GT CGG (GAC) AG 44911-45087 GA AAG -recovered pasa_asmbl_13570.p1, terminal, 44911, 45087 -recovered pasa_asmbl_13570.p1, internal, 41678, 41780 -recovered pasa_asmbl_13570.p1, internal, 43123, 43191 -recovered pasa_asmbl_13570.p1, internal, 43307, 43468 -recovered pasa_asmbl_13570.p1, internal, 43797, 43999 -recovered pasa_asmbl_13570.p1, internal, 44532, 44660 Couldn't classify 74328, 74446 Couldn't classify 75295, 75364 Sorry, prediction pasa_asmbl_13853.p1 fails validation. (ATC) GC 74328-74446 GT AGG (AAT) AG 74624-74722 GT AGG (ATA) AG 75044-75166 GT GGG (CGA) AG 75295-75364 AT GCA -recovered pasa_asmbl_13853.p1, internal, 74624, 74722 -recovered pasa_asmbl_13853.p1, internal, 75044, 75166 Valid prediction for snap_scaffold_14-snap.2557-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_34857-T1 Valid prediction for snap_scaffold_14-snap.2539-T1 Valid prediction for snap_scaffold_14-snap.2564-T1 Valid prediction for snap_scaffold_14-snap.2552-T1 Valid prediction for snap_scaffold_14-snap.2567-T1 Valid prediction for snap_scaffold_14-snap.2563-T1 Valid prediction for snap_scaffold_14-snap.2558-T1 Valid prediction for snap_scaffold_14-snap.2551-T1 Valid prediction for GlimmerHMM_glimmerT_34841-T1 Valid prediction for Augustus_model.g23312.t1 Valid prediction for GlimmerHMM_glimmerT_34856-T1 Valid prediction for Augustus_model.g23308.t1 Couldn't classify 126924, 126984 Sorry, prediction pasa_asmbl_13569.p1 fails validation. (AAT) CG 126924-126984 GT AGG (TTA) AG 127467-127651 GT AGG (GTC) AG 127966-128277 CG AAC -recovered pasa_asmbl_13569.p1, terminal, 127966, 128277 -recovered pasa_asmbl_13569.p1, internal, 127467, 127651 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21085, rend_intergenic: 17154 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24372, rend_intergenic: 21573 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28773, rend_intergenic: 27345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77567, rend_intergenic: 74692 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125416, rend_intergenic: 119704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159535, rend_intergenic: 155646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 147693, rend_intergenic: 147690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 192776 -exon list size: 352 building trellis 0.3 0.6 0.8 1.1 1.4 1.7 2.0 2.3 2.5 2.8 3.1 3.4 3.7 4.0 4.2 4.5 4.8 5.1 5.4 5.6 5.9 6.2 6.5 6.8 7.1 7.3 7.6 7.9 8.2 8.5 8.8 9.0 9.3 9.6 9.9 10.2 10.5 10.7 11.0 11.3 11.6 11.9 12.1 12.4 12.7 13.0 13.3 13.6 13.8 14.1 14.4 14.7 15.0 15.3 15.5 15.8 16.1 16.4 16.7 16.9 17.2 17.5 17.8 18.1 18.4 18.6 18.9 19.2 19.5 19.8 20.1 20.3 20.6 20.9 21.2 21.5 21.8 22.0 22.3 22.6 22.9 23.2 23.4 23.7 24.0 24.3 24.6 24.9 25.1 25.4 25.7 26.0 26.3 26.6 26.8 27.1 27.4 27.7 28.0 28.2 28.5 28.8 29.1 29.4 29.7 29.9 30.2 30.5 30.8 31.1 31.4 31.6 31.9 32.2 32.5 32.8 33.1 33.3 33.6 33.9 34.2 34.5 34.7 35.0 35.3 35.6 35.9 36.2 36.4 36.7 37.0 37.3 37.6 37.9 38.1 38.4 38.7 39.0 39.3 39.5 39.8 40.1 40.4 40.7 41.0 41.2 41.5 41.8 42.1 42.4 42.7 42.9 43.2 43.5 43.8 44.1 44.4 44.6 44.9 45.2 45.5 45.8 46.0 46.3 46.6 46.9 47.2 47.5 47.7 48.0 48.3 48.6 48.9 49.2 49.4 49.7 50.0 50.3 50.6 50.8 51.1 51.4 51.7 52.0 52.3 52.5 52.8 53.1 53.4 53.7 54.0 54.2 54.5 54.8 55.1 55.4 55.6 55.9 56.2 56.5 56.8 57.1 57.3 57.6 57.9 58.2 58.5 58.8 59.0 59.3 59.6 59.9 60.2 60.5 60.7 61.0 61.3 61.6 61.9 62.1 62.4 62.7 63.0 63.3 63.6 63.8 64.1 64.4 64.7 65.0 65.3 65.5 65.8 66.1 66.4 66.7 66.9 67.2 67.5 67.8 68.1 68.4 68.6 68.9 69.2 69.5 69.8 70.1 70.3 70.6 70.9 71.2 71.5 71.8 72.0 72.3 72.6 72.9 73.2 73.4 73.7 74.0 74.3 74.6 74.9 75.1 75.4 75.7 76.0 76.3 76.6 76.8 77.1 77.4 77.7 78.0 78.2 78.5 78.8 79.1 79.4 79.7 79.9 80.2 80.5 80.8 81.1 81.4 81.6 81.9 82.2 82.5 82.8 83.1 83.3 83.6 83.9 84.2 84.5 84.7 85.0 85.3 85.6 85.9 86.2 86.4 86.7 87.0 87.3 87.6 87.9 88.1 88.4 88.7 89.0 89.3 89.5 89.8 90.1 90.4 90.7 91.0 91.2 91.5 91.8 92.1 92.4 92.7 92.9 93.2 93.5 93.8 94.1 94.4 94.6 94.9 95.2 95.5 95.8 96.0 96.3 96.6 96.9 97.2 97.5 97.7 98.0 98.3 98.6 98.9 99.2 99.4 99.7 -found 40 predictions from path traversal Error with prediction: snap lend_intergenic: 21085, rend_intergenic: 17154 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24372, rend_intergenic: 21573 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28773, rend_intergenic: 27345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77567, rend_intergenic: 74692 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125416, rend_intergenic: 119704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159535, rend_intergenic: 155646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 147693, rend_intergenic: 147690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support