-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_11807636-11990673

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.2433-T1
Valid prediction for Augustus_model.g23241.t1
Valid prediction for HiQ_model.g23250.t1
Valid prediction for snap_scaffold_14-snap.2413-T1
Valid prediction for snap_scaffold_14-snap.2416-T1
Valid prediction for snap_scaffold_14-snap.2405-T1
Valid prediction for Augustus_model.g23251.t1
Valid prediction for Augustus_model.g23247.t1
Valid prediction for GlimmerHMM_glimmerT_34764-T1
Valid prediction for Augustus_model.g23248.t1
Valid prediction for snap_scaffold_14-snap.2431-T1
Valid prediction for GlimmerHMM_glimmerT_34762-T1
Valid prediction for snap_scaffold_14-snap.2441-T1
Valid prediction for Augustus_model.g23255.t1
Valid prediction for snap_scaffold_14-snap.2435-T1
Valid prediction for snap_scaffold_14-snap.2432-T1
Valid prediction for GlimmerHMM_glimmerT_34767-T1
Couldn't classify 92721, 92855
Couldn't classify 95686, 95725
Sorry, prediction pasa_asmbl_12767.p1 fails validation.
(AGT)	 AC	92721-92855	GT	AGG
(GAG)	 AG	93054-93220	GT	AGG
(GTA)	 AG	95686-95725	CT	ACC
-recovered pasa_asmbl_12767.p1, internal, 93054, 93220
Valid prediction for GlimmerHMM_glimmerT_34765-T1
Valid prediction for GlimmerHMM_glimmerT_34759-T1
Valid prediction for snap_scaffold_14-snap.2424-T1
Valid prediction for snap_scaffold_14-snap.2406-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g23252.t1
Valid prediction for Augustus_model.g23243.t1
Valid prediction for Augustus_model.g23244.t1
Valid prediction for Augustus_model.g23245.t1
Valid prediction for pasa_asmbl_12411.p1
Valid prediction for snap_scaffold_14-snap.2401-T1
Valid prediction for snap_scaffold_14-snap.2399-T1
Couldn't classify 80150, 80218
Couldn't classify 81526, 81636
Sorry, prediction pasa_asmbl_12732.p1 fails validation.
(CTG)	 TA	80150-80218	GT	AGG
(TCG)	 AG	81207-81323	GT	TGG
(GGC)	 AG	81526-81636	CT	CCC
-recovered pasa_asmbl_12732.p1, internal, 81207, 81323
Valid prediction for GlimmerHMM_glimmerT_34763-T1
Valid prediction for GlimmerHMM_glimmerT_34769-T1
Valid prediction for snap_scaffold_14-snap.2428-T1
Valid prediction for GlimmerHMM_glimmerT_34752-T1
Couldn't classify 133872, 133965
Sorry, prediction pasa_asmbl_12408.p1 fails validation.
(AAG)	 GC	133872-133965	GT	AGG
(TGA)	 AG	134791-134892	GT	AGG
(AGC)	 AG	135072-135268	GT	AGG
(GCT)	 AG	135388-135445	GT	TGG
(GCT)	 AG	135712-135906	GT	AGG
(GGA)	 AG	136181-136325	GT	ACG
(ACC)	 AG	136459-136519	GT	AGG
(ACG)	 AG	136662-136724	GT	AGG
(GCC)	 AG	136817-136942	GT	AGG
(ATA)	 AG	137067-137102	GT	AGG
(GGG)	 AG	137193-137244	GT	CGG
(GGA)	 AG	137353-137495	GT	AGG
-recovered pasa_asmbl_12408.p1, terminal, 137353, 137495
-recovered pasa_asmbl_12408.p1, internal, 134791, 134892
-recovered pasa_asmbl_12408.p1, internal, 135072, 135268
-recovered pasa_asmbl_12408.p1, internal, 135388, 135445
-recovered pasa_asmbl_12408.p1, internal, 135712, 135906
-recovered pasa_asmbl_12408.p1, internal, 136181, 136325
-recovered pasa_asmbl_12408.p1, internal, 136459, 136519
-recovered pasa_asmbl_12408.p1, internal, 136662, 136724
-recovered pasa_asmbl_12408.p1, internal, 136817, 136942
-recovered pasa_asmbl_12408.p1, internal, 137067, 137102
-recovered pasa_asmbl_12408.p1, internal, 137193, 137244
-recovered pasa_asmbl_12408.p1, internal, 137353, 137495
Valid prediction for GlimmerHMM_glimmerT_34755-T1
Valid prediction for snap_scaffold_14-snap.2438-T1
Valid prediction for Augustus_model.g23246.t1
Valid prediction for snap_scaffold_14-snap.2419-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g23240.t1
Valid prediction for GlimmerHMM_glimmerT_34758-T1
Valid prediction for GlimmerHMM_glimmerT_34756-T1
Valid prediction for snap_scaffold_14-snap.2443-T1
Valid prediction for snap_scaffold_14-snap.2426-T1
Valid prediction for GlimmerHMM_glimmerT_34768-T1
Valid prediction for snap_scaffold_14-snap.2408-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34750-T1
Valid prediction for snap_scaffold_14-snap.2411-T1
Valid prediction for GlimmerHMM_glimmerT_34748-T1
Valid prediction for Augustus_model.g23236.t1
Valid prediction for snap_scaffold_14-snap.2434-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.2414-T1
Valid prediction for Augustus_model.g23249.t1
Valid prediction for Augustus_model.g23239.t1
Valid prediction for Augustus_model.g23254.t1
Valid prediction for GlimmerHMM_glimmerT_34747-T1
Valid prediction for snap_scaffold_14-snap.2415-T1
Valid prediction for GlimmerHMM_glimmerT_34749-T1
Valid prediction for snap_scaffold_14-snap.2397-T1
Valid prediction for Augustus_model.g23242.t1
Valid prediction for snap_scaffold_14-snap.2410-T1
Valid prediction for GlimmerHMM_glimmerT_34751-T1
Valid prediction for GlimmerHMM_glimmerT_34760-T1
Valid prediction for snap_scaffold_14-snap.2409-T1
Valid prediction for snap_scaffold_14-snap.2436-T1
Valid prediction for Augustus_model.g23257.t1
Valid prediction for snap_scaffold_14-snap.2418-T1
Valid prediction for snap_scaffold_14-snap.2407-T1
Valid prediction for snap_scaffold_14-snap.2427-T1
Valid prediction for snap_scaffold_14-snap.2403-T1
Valid prediction for GlimmerHMM_glimmerT_34753-T1
Valid prediction for snap_scaffold_14-snap.2440-T1
Valid prediction for snap_scaffold_14-snap.2398-T1
Valid prediction for Augustus_model.g23237.t1
Valid prediction for snap_scaffold_14-snap.2420-T1
Valid prediction for GlimmerHMM_glimmerT_34770-T1
Valid prediction for snap_scaffold_14-snap.2400-T1
Valid prediction for snap_scaffold_14-snap.2421-T1
Valid prediction for snap_scaffold_14-snap.2430-T1
Valid prediction for snap_scaffold_14-snap.2437-T1
Valid prediction for GlimmerHMM_glimmerT_34746-T1
Valid prediction for snap_scaffold_14-snap.2425-T1
Valid prediction for snap_scaffold_14-snap.2422-T1
Valid prediction for Augustus_model.g23253.t1
Valid prediction for snap_scaffold_14-snap.2439-T1
Valid prediction for snap_scaffold_14-snap.2402-T1
Valid prediction for snap_scaffold_14-snap.2417-T1
Valid prediction for snap_scaffold_14-snap.2442-T1
Valid prediction for snap_scaffold_14-snap.2404-T1
Valid prediction for GlimmerHMM_glimmerT_34771-T1
Valid prediction for GlimmerHMM_glimmerT_34757-T1
Valid prediction for GlimmerHMM_glimmerT_34761-T1
Valid prediction for snap_scaffold_14-snap.2444-T1
Valid prediction for GlimmerHMM_glimmerT_34766-T1
Valid prediction for Augustus_model.g23256.t1
Valid prediction for snap_scaffold_14-snap.2423-T1
Valid prediction for snap_scaffold_14-snap.2412-T1
Valid prediction for GlimmerHMM_glimmerT_34754-T1
Valid prediction for snap_scaffold_14-snap.2429-T1
Valid prediction for Augustus_model.g23238.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7613, rend_intergenic: 7361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9538, rend_intergenic: 8487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13953, rend_intergenic: 10192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33361, rend_intergenic: 25689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45315, rend_intergenic: 36202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74604, rend_intergenic: 67157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93666, rend_intergenic: 78138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97322, rend_intergenic: 93829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100465, rend_intergenic: 97681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111836, rend_intergenic: 104652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117180, rend_intergenic: 111938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121894, rend_intergenic: 117359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164149, rend_intergenic: 147066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182323, rend_intergenic: 175778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 183038
-exon list size: 427


building trellis

0.2    
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1.2    
1.4    
1.6    
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2.8    
3.0    
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3.7    
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10.0    
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12.1    
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13.8    
14.0    
14.2    
14.5    
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14.9    
15.2    
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15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.0    
17.2    
17.5    
17.7    
17.9    
18.2    
18.4    
18.6    
18.9    
19.1    
19.3    
19.6    
19.8    
20.0    
20.3    
20.5    
20.7    
21.0    
21.2    
21.4    
21.7    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.3    
26.6    
26.8    
27.0    
27.3    
27.5    
27.7    
28.0    
28.2    
28.4    
28.7    
28.9    
29.1    
29.4    
29.6    
29.8    
30.1    
30.3    
30.5    
30.8    
31.0    
31.2    
31.5    
31.7    
31.9    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.3    
34.5    
34.7    
35.0    
35.2    
35.4    
35.7    
35.9    
36.1    
36.4    
36.6    
36.8    
37.1    
37.3    
37.5    
37.8    
38.0    
38.2    
38.5    
38.7    
38.9    
39.2    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
42.0    
42.2    
42.4    
42.7    
42.9    
43.1    
43.4    
43.6    
43.8    
44.1    
44.3    
44.5    
44.8    
45.0    
45.2    
45.5    
45.7    
45.9    
46.2    
46.4    
46.6    
46.9    
47.1    
47.3    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.7    
52.9    
53.1    
53.4    
53.6    
53.8    
54.1    
54.3    
54.5    
54.8    
55.0    
55.2    
55.5    
55.7    
55.9    
56.2    
56.4    
56.6    
56.9    
57.1    
57.3    
57.6    
57.8    
58.0    
58.3    
58.5    
58.7    
59.0    
59.2    
59.4    
59.7    
59.9    
60.1    
60.4    
60.6    
60.8    
61.1    
61.3    
61.5    
61.8    
62.0    
62.2    
62.5    
62.7    
62.9    
63.2    
63.4    
63.6    
63.9    
64.1    
64.3    
64.6    
64.8    
65.0    
65.3    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.1    
68.3    
68.5    
68.8    
69.0    
69.2    
69.5    
69.7    
69.9    
70.2    
70.4    
70.6    
70.9    
71.1    
71.3    
71.6    
71.8    
72.0    
72.3    
72.5    
72.7    
73.0    
73.2    
73.4    
73.7    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.3    
78.6    
78.8    
79.0    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.7    
80.9    
81.1    
81.4    
81.6    
81.8    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.8    
85.1    
85.3    
85.5    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.2    
87.4    
87.6    
87.9    
88.1    
88.3    
88.6    
88.8    
89.0    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 7613, rend_intergenic: 7361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9538, rend_intergenic: 8487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13953, rend_intergenic: 10192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33361, rend_intergenic: 25689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45315, rend_intergenic: 36202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74604, rend_intergenic: 67157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93666, rend_intergenic: 78138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97322, rend_intergenic: 93829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100465, rend_intergenic: 97681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111836, rend_intergenic: 104652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117180, rend_intergenic: 111938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121894, rend_intergenic: 117359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164149, rend_intergenic: 147066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182323, rend_intergenic: 175778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support