-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_10308120-10473570

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.2141-T1
Valid prediction for snap_scaffold_14-snap.2116-T1
Valid prediction for snap_scaffold_14-snap.2137-T1
Valid prediction for pasa_asmbl_12676.p1
Valid prediction for snap_scaffold_14-snap.2115-T1
Valid prediction for snap_scaffold_14-snap.2120-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_15808-T1
Valid prediction for snap_scaffold_14-snap.2128-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 85376, 85780
Sorry, prediction pasa_asmbl_12313.p1 fails validation.
(ATA)	 AG	85376-85780	AG	CCA
Valid prediction for pasa_asmbl_12316.p1
Couldn't classify 89575, 89678
Couldn't classify 91318, 91397
Sorry, prediction pasa_asmbl_12314.p1 fails validation.
(GGC)	 TG	89575-89678	GT	GCG
(GAA)	 AG	90245-90327	GT	AGG
(AGC)	 AG	90434-90551	GT	ATG
(GAA)	 AG	90778-90884	GT	AGG
(AGC)	 AG	91318-91397	GG	ACG
-recovered pasa_asmbl_12314.p1, internal, 90245, 90327
-recovered pasa_asmbl_12314.p1, internal, 90434, 90551
-recovered pasa_asmbl_12314.p1, internal, 90778, 90884
Valid prediction for snap_scaffold_14-snap.2117-T1
Valid prediction for GlimmerHMM_glimmerT_34555-T1
Valid prediction for snap_scaffold_14-snap.2118-T1
Valid prediction for HiQ_model.g23080.t1
Valid prediction for snap_scaffold_14-snap.2131-T1
Valid prediction for snap_scaffold_14-snap.2142-T1
Valid prediction for snap_scaffold_14-snap.2121-T1
Valid prediction for GlimmerHMM_glimmerT_34562-T1
Valid prediction for GlimmerHMM_glimmerT_34550-T1
Valid prediction for snap_scaffold_14-snap.2133-T1
Valid prediction for snap_scaffold_14-snap.2124-T1
Valid prediction for snap_scaffold_14-snap.2126-T1
Valid prediction for snap_scaffold_14-snap.2139-T1
Valid prediction for Augustus_model.g23079.t1
Valid prediction for GlimmerHMM_glimmerT_34552-T1
Couldn't classify 73902, 73916
Sorry, prediction pasa_asmbl_12311.p1 fails validation.
(TAC)	 GA	73902-73916	GT	AGG
(ATC)	 AG	74207-74312	GT	CGG
(GTT)	 AG	74408-74594	GT	AGG
(GCA)	 AG	74723-74879	GT	AGG
(GCT)	 AG	75017-75079	GG	GAG
-recovered pasa_asmbl_12311.p1, terminal, 75017, 75079
-recovered pasa_asmbl_12311.p1, internal, 74207, 74312
-recovered pasa_asmbl_12311.p1, internal, 74408, 74594
-recovered pasa_asmbl_12311.p1, internal, 74723, 74879
Valid prediction for snap_scaffold_14-snap.2138-T1
Valid prediction for snap_scaffold_14-snap.2145-T1
Valid prediction for snap_scaffold_14-snap.2136-T1
Valid prediction for GlimmerHMM_glimmerT_34558-T1
Valid prediction for CodingQuarry_transcript_15810-T1
Couldn't classify 92409, 92498
Sorry, prediction pasa_asmbl_12315.p1 fails validation.
(GGG)	 AC	92409-92498	GT	AGG
(GGT)	 AG	92624-92695	GT	ATG
(GTC)	 AG	92784-92912	GT	TGG
(ATG)	 AG	93238-93347	GT	TGG
(GAT)	 AG	93471-93729	GT	AGG
(GTT)	 AG	94445-94492	TA	GAT
-recovered pasa_asmbl_12315.p1, initial, 93238, 93347
-recovered pasa_asmbl_12315.p1, terminal, 94445, 94492
-recovered pasa_asmbl_12315.p1, internal, 92624, 92695
-recovered pasa_asmbl_12315.p1, internal, 92784, 92912
-recovered pasa_asmbl_12315.p1, internal, 93238, 93347
-recovered pasa_asmbl_12315.p1, internal, 93471, 93729
Valid prediction for GlimmerHMM_glimmerT_34559-T1
Valid prediction for HiQ_model.g23075.t1
Couldn't classify 66843, 66875
Couldn't classify 67522, 67622
Sorry, prediction pasa_asmbl_12713.p1 fails validation.
(GGA)	 AT	66843-66875	GT	AGG
(CAC)	 AG	67118-67304	GT	TTG
(ATG)	 AG	67522-67622	CT	CCC
-recovered pasa_asmbl_12713.p1, internal, 67118, 67304
Valid prediction for GlimmerHMM_glimmerT_34548-T1
Valid prediction for snap_scaffold_14-snap.2119-T1
Valid prediction for Augustus_model.g23077.t1
Valid prediction for snap_scaffold_14-snap.2122-T1
Valid prediction for GlimmerHMM_glimmerT_34554-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.2130-T1
Valid prediction for GlimmerHMM_glimmerT_34557-T1
Valid prediction for snap_scaffold_14-snap.2146-T1
Valid prediction for Augustus_model.g23086.t1
Valid prediction for GlimmerHMM_glimmerT_34560-T1
Valid prediction for Augustus_model.g23082.t1
Valid prediction for snap_scaffold_14-snap.2143-T1
Valid prediction for GlimmerHMM_glimmerT_34553-T1
Couldn't classify 124210, 124972
Couldn't classify 125123, 125307
Sorry, prediction pasa_asmbl_13414.p1 fails validation.
(CGC)	 CC	124210-124972	GT	TGG
(GCT)	 AG	125123-125307	CT	GCC
Valid prediction for Augustus_model.g23085.t1
Valid prediction for HiQ_model.g23076.t1
Valid prediction for Augustus_model.g23073.t1
Couldn't classify 5648, 6316
Sorry, prediction pasa_asmbl_13426.p1 fails validation.
(CGG)	 TC	5648-6316	GA	GAG
Valid prediction for GlimmerHMM_glimmerT_34561-T1
Valid prediction for snap_scaffold_14-snap.2123-T1
Valid prediction for Augustus_model.g23070.t1
Valid prediction for Augustus_model.g23078.t1
Valid prediction for Augustus_model.g23069.t1
Valid prediction for Augustus_model.g23071.t1
Valid prediction for GlimmerHMM_glimmerT_34551-T1
Valid prediction for CodingQuarry_transcript_15809-T1
Valid prediction for GlimmerHMM_glimmerT_34564-T1
Valid prediction for snap_scaffold_14-snap.2114-T1
Couldn't classify 47072, 47274
Couldn't classify 50466, 50539
Sorry, prediction pasa_asmbl_13423.p1 fails validation.
(GAC)	 CG	47072-47274	GT	CAG
(CTC)	 AG	48485-48526	GT	TTG
(ATT)	 AG	48947-49316	GT	AGG
(GCG)	 AG	49430-49699	GT	AGG
(GAG)	 AG	49812-49976	GT	GGG
(GCA)	 AG	50116-50233	GT	AGG
(CAG)	 AG	50466-50539	TC	CGT
-recovered pasa_asmbl_13423.p1, internal, 48485, 48526
-recovered pasa_asmbl_13423.p1, internal, 48947, 49316
-recovered pasa_asmbl_13423.p1, internal, 49430, 49699
-recovered pasa_asmbl_13423.p1, internal, 49812, 49976
-recovered pasa_asmbl_13423.p1, internal, 50116, 50233
Valid prediction for GlimmerHMM_glimmerT_34547-T1
Valid prediction for snap_scaffold_14-snap.2144-T1
Valid prediction for Augustus_model.g23081.t1
Valid prediction for GlimmerHMM_glimmerT_34549-T1
Couldn't classify 50906, 51024
Couldn't classify 56751, 57043
Sorry, prediction pasa_asmbl_13782.p1 fails validation.
(TGG)	 CA	50906-51024	GT	AGG
(CAT)	 AG	51282-51412	GT	GGG
(ACC)	 AG	51598-51836	GT	AGG
(AAA)	 AG	51946-52007	GT	AGG
(GTT)	 AG	52163-52328	GT	AGG
(GTG)	 AG	52423-52530	GT	AAG
(GAT)	 AG	52858-52974	GT	AGG
(GCG)	 AG	53232-53390	GT	AGG
(GCT)	 AG	53484-53619	GT	TGG
(CCG)	 AG	53940-53987	GT	AGG
(ACA)	 AG	55415-55533	GT	AGG
(GTG)	 AG	55716-55833	GT	AGG
(GGC)	 AG	56173-56307	GT	GGG
(GTG)	 AG	56751-57043	GG	ACG
-recovered pasa_asmbl_13782.p1, internal, 51282, 51412
-recovered pasa_asmbl_13782.p1, internal, 51598, 51836
-recovered pasa_asmbl_13782.p1, internal, 51946, 52007
-recovered pasa_asmbl_13782.p1, internal, 52163, 52328
-recovered pasa_asmbl_13782.p1, internal, 52423, 52530
-recovered pasa_asmbl_13782.p1, internal, 52858, 52974
-recovered pasa_asmbl_13782.p1, internal, 53232, 53390
-recovered pasa_asmbl_13782.p1, internal, 53484, 53619
-recovered pasa_asmbl_13782.p1, internal, 53940, 53987
-recovered pasa_asmbl_13782.p1, internal, 55415, 55533
-recovered pasa_asmbl_13782.p1, internal, 55716, 55833
-recovered pasa_asmbl_13782.p1, internal, 56173, 56307
Valid prediction for pasa_asmbl_13416.p1
Valid prediction for Augustus_model.g23083.t1
Valid prediction for Augustus_model.g23074.t1
Valid prediction for snap_scaffold_14-snap.2129-T1
Couldn't classify 57974, 58135
Sorry, prediction pasa_asmbl_13421.p1 fails validation.
(CAG)	 AC	57974-58135	GT	CGG
(ATC)	 AG	58655-58916	GT	AGG
(GCT)	 AG	59169-59287	GT	TGG
(CTG)	 AG	59394-59522	GT	CGG
(ATA)	 AG	59640-59822	GT	AGG
(AAG)	 AG	59993-60163	GT	AGG
(ACC)	 AG	60430-60642	GT	AGG
(ATG)	 AG	60744-60882	GT	CAG
(GGT)	 AG	61537-61661	AT	GAA
-recovered pasa_asmbl_13421.p1, initial, 60744, 60882
-recovered pasa_asmbl_13421.p1, terminal, 61537, 61661
-recovered pasa_asmbl_13421.p1, internal, 58655, 58916
-recovered pasa_asmbl_13421.p1, internal, 59169, 59287
-recovered pasa_asmbl_13421.p1, internal, 59394, 59522
-recovered pasa_asmbl_13421.p1, internal, 59640, 59822
-recovered pasa_asmbl_13421.p1, internal, 59993, 60163
-recovered pasa_asmbl_13421.p1, internal, 60430, 60642
-recovered pasa_asmbl_13421.p1, internal, 60744, 60882
Valid prediction for snap_scaffold_14-snap.2134-T1
Valid prediction for snap_scaffold_14-snap.2140-T1
Valid prediction for Augustus_model.g23084.t1
Valid prediction for snap_scaffold_14-snap.2147-T1
Valid prediction for snap_scaffold_14-snap.2127-T1
Valid prediction for snap_scaffold_14-snap.2125-T1
Valid prediction for snap_scaffold_14-snap.2132-T1
Valid prediction for snap_scaffold_14-snap.2135-T1
Valid prediction for pasa_asmbl_13418.p1
Couldn't classify 128933, 128977
Couldn't classify 137862, 138017
Sorry, prediction pasa_asmbl_13413.p1 fails validation.
(CTC)	 TA	128933-128977	GC	AGG
(GAT)	 AG	129954-130053	GT	TGG
(GTG)	 AG	131515-131599	GT	AGG
(CAG)	 AG	131856-131982	GT	AGG
(CTG)	 AG	133493-133570	GT	AGG
(TTG)	 AG	135220-135306	GT	TGG
(GCG)	 AG	137862-138017	AG	GGA
-recovered pasa_asmbl_13413.p1, internal, 129954, 130053
-recovered pasa_asmbl_13413.p1, internal, 131515, 131599
-recovered pasa_asmbl_13413.p1, internal, 131856, 131982
-recovered pasa_asmbl_13413.p1, internal, 133493, 133570
-recovered pasa_asmbl_13413.p1, internal, 135220, 135306
Valid prediction for GlimmerHMM_glimmerT_34556-T1
Valid prediction for Augustus_model.g23072.t1
Valid prediction for GlimmerHMM_glimmerT_34563-T1
Couldn't classify 146668, 147012
Sorry, prediction pasa_asmbl_13410.p1 fails validation.
(CAG)	 TC	146668-147012	TC	CCT
Couldn't classify 108249, 108263
Sorry, prediction pasa_asmbl_13417.p1 fails validation.
(ATG)	 AG	107477-107515	GT	TGG
(ACG)	 AG	107800-107977	GT	GGG
(CAG)	 AG	108090-108148	GT	AAG
(CCC)	 AG	108249-108263	GA	AGG
-recovered pasa_asmbl_13417.p1, initial, 107477, 107515
-recovered pasa_asmbl_13417.p1, internal, 107477, 107515
-recovered pasa_asmbl_13417.p1, internal, 107800, 107977
-recovered pasa_asmbl_13417.p1, internal, 108090, 108148

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36124, rend_intergenic: 14840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45257, rend_intergenic: 39434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75079, rend_intergenic: 65315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94688, rend_intergenic: 85909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101312, rend_intergenic: 96469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126059, rend_intergenic: 105241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136783, rend_intergenic: 133026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146030, rend_intergenic: 139863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 165451
-exon list size: 388


building trellis

0.3    
0.5    
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1.0    
1.3    
1.5    
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2.1    
2.3    
2.6    
2.8    
3.1    
3.3    
3.6    
3.8    
4.1    
4.4    
4.6    
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5.1    
5.4    
5.6    
5.9    
6.2    
6.4    
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6.9    
7.2    
7.4    
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7.9    
8.2    
8.5    
8.7    
9.0    
9.2    
9.5    
9.7    
10.0    
10.3    
10.5    
10.8    
11.0    
11.3    
11.5    
11.8    
12.1    
12.3    
12.6    
12.8    
13.1    
13.3    
13.6    
13.8    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.2    
16.4    
16.7    
16.9    
17.2    
17.4    
17.7    
17.9    
18.2    
18.5    
18.7    
19.0    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.0    
21.3    
21.5    
21.8    
22.1    
22.3    
22.6    
22.8    
23.1    
23.3    
23.6    
23.8    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
26.2    
26.4    
26.7    
26.9    
27.2    
27.4    
27.7    
27.9    
28.2    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.0    
31.3    
31.5    
31.8    
32.1    
32.3    
32.6    
32.8    
33.1    
33.3    
33.6    
33.8    
34.1    
34.4    
34.6    
34.9    
35.1    
35.4    
35.6    
35.9    
36.2    
36.4    
36.7    
36.9    
37.2    
37.4    
37.7    
37.9    
38.2    
38.5    
38.7    
39.0    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.0    
41.3    
41.5    
41.8    
42.1    
42.3    
42.6    
42.8    
43.1    
43.3    
43.6    
43.8    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.4    
47.7    
47.9    
48.2    
48.5    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.5    
51.8    
52.1    
52.3    
52.6    
52.8    
53.1    
53.3    
53.6    
53.8    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.2    
56.4    
56.7    
56.9    
57.2    
57.4    
57.7    
57.9    
58.2    
58.5    
58.7    
59.0    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.0    
61.3    
61.5    
61.8    
62.1    
62.3    
62.6    
62.8    
63.1    
63.3    
63.6    
63.8    
64.1    
64.4    
64.6    
64.9    
65.1    
65.4    
65.6    
65.9    
66.2    
66.4    
66.7    
66.9    
67.2    
67.4    
67.7    
67.9    
68.2    
68.5    
68.7    
69.0    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.8    
72.1    
72.3    
72.6    
72.8    
73.1    
73.3    
73.6    
73.8    
74.1    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.9    
76.2    
76.4    
76.7    
76.9    
77.2    
77.4    
77.7    
77.9    
78.2    
78.5    
78.7    
79.0    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.0    
81.3    
81.5    
81.8    
82.1    
82.3    
82.6    
82.8    
83.1    
83.3    
83.6    
83.8    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.2    
86.4    
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86.9    
87.2    
87.4    
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87.9    
88.2    
88.5    
88.7    
89.0    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.8    
92.1    
92.3    
92.6    
92.8    
93.1    
93.3    
93.6    
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94.1    
94.4    
94.6    
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95.6    
95.9    
96.2    
96.4    
96.7    
96.9    
97.2    
97.4    
97.7    
97.9    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 36124, rend_intergenic: 14840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45257, rend_intergenic: 39434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75079, rend_intergenic: 65315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94688, rend_intergenic: 85909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101312, rend_intergenic: 96469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126059, rend_intergenic: 105241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136783, rend_intergenic: 133026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146030, rend_intergenic: 139863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support