-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_10040835-10310260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g23063.t1
Valid prediction for GlimmerHMM_glimmerT_34523-T1
Valid prediction for snap_scaffold_14-snap.2107-T1
Valid prediction for snap_scaffold_14-snap.2074-T1
Valid prediction for Augustus_model.g23068.t1
Valid prediction for snap_scaffold_14-snap.2105-T1
Valid prediction for snap_scaffold_14-snap.2102-T1
Valid prediction for GlimmerHMM_glimmerT_34543-T1
Valid prediction for snap_scaffold_14-snap.2109-T1
Valid prediction for snap_scaffold_14-snap.2093-T1
Valid prediction for Augustus_model.g23060.t1
Couldn't classify 2993, 3352
Sorry, prediction pasa_asmbl_12310.p1 fails validation.
(ATG)	 CA	2993-3352	CA	GCC
Valid prediction for GlimmerHMM_glimmerT_34537-T1
Valid prediction for snap_scaffold_14-snap.2100-T1
Valid prediction for GlimmerHMM_glimmerT_34521-T1
Valid prediction for GlimmerHMM_glimmerT_34529-T1
Valid prediction for snap_scaffold_14-snap.2077-T1
Valid prediction for Augustus_model.g23056.t1
Valid prediction for Augustus_model.g23058.t1
Valid prediction for snap_scaffold_14-snap.2084-T1
Valid prediction for Augustus_model.g23064.t1
Valid prediction for snap_scaffold_14-snap.2111-T1
Valid prediction for snap_scaffold_14-snap.2101-T1
Valid prediction for Augustus_model.g23057.t1
Valid prediction for Augustus_model.g23065.t1
Valid prediction for GlimmerHMM_glimmerT_34535-T1
Valid prediction for snap_scaffold_14-snap.2068-T1
Valid prediction for snap_scaffold_14-snap.2098-T1
Valid prediction for snap_scaffold_14-snap.2108-T1
Valid prediction for snap_scaffold_14-snap.2104-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_34542-T1
Valid prediction for pasa_asmbl_12706.p1
Valid prediction for snap_scaffold_14-snap.2092-T1
Valid prediction for snap_scaffold_14-snap.2094-T1
Valid prediction for snap_scaffold_14-snap.2090-T1
Valid prediction for snap_scaffold_14-snap.2064-T1
Valid prediction for snap_scaffold_14-snap.2088-T1
Valid prediction for snap_scaffold_14-snap.2079-T1
Valid prediction for Augustus_model.g23061.t1
Valid prediction for Augustus_model.g23066.t1
Valid prediction for snap_scaffold_14-snap.2071-T1
Valid prediction for GlimmerHMM_glimmerT_34525-T1
Valid prediction for GlimmerHMM_glimmerT_34544-T1
Valid prediction for GlimmerHMM_glimmerT_34527-T1
Valid prediction for snap_scaffold_14-snap.2106-T1
Valid prediction for snap_scaffold_14-snap.2069-T1
Valid prediction for GlimmerHMM_glimmerT_34528-T1
Valid prediction for Augustus_model.g23054.t1
Valid prediction for snap_scaffold_14-snap.2096-T1
Valid prediction for GlimmerHMM_glimmerT_34545-T1
Valid prediction for Augustus_model.g23067.t1
Valid prediction for snap_scaffold_14-snap.2082-T1
Valid prediction for snap_scaffold_14-snap.2099-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34522-T1
Valid prediction for snap_scaffold_14-snap.2072-T1
Valid prediction for snap_scaffold_14-snap.2097-T1
Valid prediction for GlimmerHMM_glimmerT_34536-T1
Valid prediction for snap_scaffold_14-snap.2085-T1
Valid prediction for snap_scaffold_14-snap.2081-T1
Valid prediction for snap_scaffold_14-snap.2089-T1
Valid prediction for snap_scaffold_14-snap.2110-T1
Valid prediction for GlimmerHMM_glimmerT_34530-T1
Valid prediction for GlimmerHMM_glimmerT_34539-T1
Valid prediction for GlimmerHMM_glimmerT_34533-T1
Valid prediction for snap_scaffold_14-snap.2065-T1
Valid prediction for snap_scaffold_14-snap.2070-T1
Valid prediction for snap_scaffold_14-snap.2076-T1
Valid prediction for snap_scaffold_14-snap.2067-T1
Valid prediction for GlimmerHMM_glimmerT_34534-T1
Valid prediction for Augustus_model.g23059.t1
Valid prediction for snap_scaffold_14-snap.2095-T1
Valid prediction for GlimmerHMM_glimmerT_34531-T1
Valid prediction for snap_scaffold_14-snap.2087-T1
Valid prediction for snap_scaffold_14-snap.2080-T1
Valid prediction for snap_scaffold_14-snap.2091-T1
Valid prediction for snap_scaffold_14-snap.2112-T1
Valid prediction for snap_scaffold_14-snap.2083-T1
Valid prediction for snap_scaffold_14-snap.2078-T1
Valid prediction for GlimmerHMM_glimmerT_34540-T1
Valid prediction for snap_scaffold_14-snap.2073-T1
Valid prediction for GlimmerHMM_glimmerT_34538-T1
Valid prediction for snap_scaffold_14-snap.2075-T1
Valid prediction for GlimmerHMM_glimmerT_34526-T1
Valid prediction for Augustus_model.g23055.t1
Valid prediction for GlimmerHMM_glimmerT_34524-T1
Valid prediction for Augustus_model.g23062.t1
Valid prediction for snap_scaffold_14-snap.2086-T1
Valid prediction for snap_scaffold_14-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_34541-T1
Valid prediction for GlimmerHMM_glimmerT_34532-T1
Valid prediction for snap_scaffold_14-snap.2103-T1
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19013, rend_intergenic: 5954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28577, rend_intergenic: 26203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29340, rend_intergenic: 29017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37782, rend_intergenic: 30981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43533, rend_intergenic: 41247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64117, rend_intergenic: 58840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94289, rend_intergenic: 64234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96618, rend_intergenic: 95237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115073, rend_intergenic: 109631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155720, rend_intergenic: 147112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172581, rend_intergenic: 166760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178320, rend_intergenic: 173921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211725, rend_intergenic: 204763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 269426
-exon list size: 346


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.8    
47.1    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.9    
53.2    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 19013, rend_intergenic: 5954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28577, rend_intergenic: 26203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29340, rend_intergenic: 29017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37782, rend_intergenic: 30981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43533, rend_intergenic: 41247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64117, rend_intergenic: 58840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94289, rend_intergenic: 64234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96618, rend_intergenic: 95237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115073, rend_intergenic: 109631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155720, rend_intergenic: 147112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172581, rend_intergenic: 166760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178320, rend_intergenic: 173921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211725, rend_intergenic: 204763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support