-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_1-172282

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_33086-T1
Valid prediction for Augustus_model.g22087.t1
Valid prediction for Augustus_model.g22084.t1
Valid prediction for snap_scaffold_14-snap.14-T1
Valid prediction for snap_scaffold_14-snap.22-T1
Valid prediction for GlimmerHMM_glimmerT_33109-T1
Valid prediction for snap_scaffold_14-snap.16-T1
Valid prediction for snap_scaffold_14-snap.29-T1
Valid prediction for Augustus_model.g22079.t1
Valid prediction for GlimmerHMM_glimmerT_33100-T1
Valid prediction for GlimmerHMM_glimmerT_33098-T1
Valid prediction for GlimmerHMM_glimmerT_33094-T1
Valid prediction for snap_scaffold_14-snap.25-T1
Valid prediction for GlimmerHMM_glimmerT_33093-T1
Valid prediction for GlimmerHMM_glimmerT_33101-T1
Valid prediction for snap_scaffold_14-snap.9-T1
Valid prediction for GlimmerHMM_glimmerT_33107-T1
Valid prediction for Augustus_model.g22082.t1
Valid prediction for GlimmerHMM_glimmerT_33088-T1
Valid prediction for snap_scaffold_14-snap.1-T1
Valid prediction for Augustus_model.g22086.t1
Valid prediction for snap_scaffold_14-snap.12-T1
Valid prediction for snap_scaffold_14-snap.15-T1
Valid prediction for Augustus_model.g22089.t1
Valid prediction for GlimmerHMM_glimmerT_33102-T1
Valid prediction for snap_scaffold_14-snap.10-T1
Valid prediction for snap_scaffold_14-snap.6-T1
Valid prediction for snap_scaffold_14-snap.26-T1
Valid prediction for GlimmerHMM_glimmerT_33082-T1
Valid prediction for GlimmerHMM_glimmerT_33090-T1
Valid prediction for GlimmerHMM_glimmerT_33104-T1
Valid prediction for Augustus_model.g22085.t1
Valid prediction for GlimmerHMM_glimmerT_33087-T1
Valid prediction for GlimmerHMM_glimmerT_33095-T1
Valid prediction for Augustus_model.g22076.t1
Valid prediction for snap_scaffold_14-snap.21-T1
Valid prediction for Augustus_model.g22080.t1
Valid prediction for snap_scaffold_14-snap.5-T1
Valid prediction for snap_scaffold_14-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_33097-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.13-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_33091-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22077.t1
Valid prediction for GlimmerHMM_glimmerT_33084-T1
Valid prediction for Augustus_model.g22081.t1
Valid prediction for snap_scaffold_14-snap.3-T1
Valid prediction for snap_scaffold_14-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_33108-T1
Valid prediction for GlimmerHMM_glimmerT_33085-T1
Valid prediction for snap_scaffold_14-snap.27-T1
Valid prediction for GlimmerHMM_glimmerT_33099-T1
Valid prediction for pasa_asmbl_12778.p1
Valid prediction for snap_scaffold_14-snap.28-T1
Valid prediction for snap_scaffold_14-snap.11-T1
Valid prediction for GlimmerHMM_glimmerT_33089-T1
Valid prediction for GlimmerHMM_glimmerT_33106-T1
Valid prediction for snap_scaffold_14-snap.19-T1
Valid prediction for snap_scaffold_14-snap.23-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.17-T1
Valid prediction for GlimmerHMM_glimmerT_33096-T1
Valid prediction for GlimmerHMM_glimmerT_33092-T1
Valid prediction for Augustus_model.g22083.t1
Valid prediction for Augustus_model.g22078.t1
Valid prediction for snap_scaffold_14-snap.20-T1
Valid prediction for GlimmerHMM_glimmerT_33105-T1
Valid prediction for snap_scaffold_14-snap.18-T1
Valid prediction for GlimmerHMM_glimmerT_33110-T1
Valid prediction for GlimmerHMM_glimmerT_33103-T1
Valid prediction for snap_scaffold_14-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_33083-T1
Valid prediction for Augustus_model.g22088.t1
Valid prediction for snap_scaffold_14-snap.24-T1
Valid prediction for snap_scaffold_14-snap.2-T1
Valid prediction for HiQ_model.g22090.t1
Valid prediction for Augustus_model.g22091.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 172282
-exon list size: 207


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.3    
3.8    
4.3    
4.8    
5.3    
5.7    
6.2    
6.7    
7.2    
7.7    
8.1    
8.6    
9.1    
9.6    
10.0    
10.5    
11.0    
11.5    
12.0    
12.4    
12.9    
13.4    
13.9    
14.4    
14.8    
15.3    
15.8    
16.3    
16.7    
17.2    
17.7    
18.2    
18.7    
19.1    
19.6    
20.1    
20.6    
21.1    
21.5    
22.0    
22.5    
23.0    
23.4    
23.9    
24.4    
24.9    
25.4    
25.8    
26.3    
26.8    
27.3    
27.8    
28.2    
28.7    
29.2    
29.7    
30.1    
30.6    
31.1    
31.6    
32.1    
32.5    
33.0    
33.5    
34.0    
34.4    
34.9    
35.4    
35.9    
36.4    
36.8    
37.3    
37.8    
38.3    
38.8    
39.2    
39.7    
40.2    
40.7    
41.1    
41.6    
42.1    
42.6    
43.1    
43.5    
44.0    
44.5    
45.0    
45.5    
45.9    
46.4    
46.9    
47.4    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.6    
53.1    
53.6    
54.1    
54.5    
55.0    
55.5    
56.0    
56.5    
56.9    
57.4    
57.9    
58.4    
58.9    
59.3    
59.8    
60.3    
60.8    
61.2    
61.7    
62.2    
62.7    
63.2    
63.6    
64.1    
64.6    
65.1    
65.6    
66.0    
66.5    
67.0    
67.5    
67.9    
68.4    
68.9    
69.4    
69.9    
70.3    
70.8    
71.3    
71.8    
72.2    
72.7    
73.2    
73.7    
74.2    
74.6    
75.1    
75.6    
76.1    
76.6    
77.0    
77.5    
78.0    
78.5    
78.9    
79.4    
79.9    
80.4    
80.9    
81.3    
81.8    
82.3    
82.8    
83.3    
83.7    
84.2    
84.7    
85.2    
85.6    
86.1    
86.6    
87.1    
87.6    
88.0    
88.5    
89.0    
89.5    
90.0    
90.4    
90.9    
91.4    
91.9    
92.3    
92.8    
93.3    
93.8    
94.3    
94.7    
95.2    
95.7    
96.2    
96.7    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 34 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support