-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1383

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2351, 2453
Sorry, prediction snap_scaffold_1383-snap.2-T1 fails validation.
(ATG)	 AG	1237-1511	GT	AGG
(GAA)	 AG	2066-2115	GT	AGG
(GTT)	 AG	2351-2453	GT	GGG
-recovered snap_scaffold_1383-snap.2-T1, initial, 1237, 1511
-recovered snap_scaffold_1383-snap.2-T1, internal, 1237, 1511
-recovered snap_scaffold_1383-snap.2-T1, internal, 2066, 2115
-recovered snap_scaffold_1383-snap.2-T1, internal, 2351, 2453
Valid prediction for snap_scaffold_1383-snap.1-T1
add_exon() Sorry, snap_scaffold_1383-snap.1-T1 809-1124-terminal-1 is invalid.
Couldn't classify 2040, 2115
Couldn't classify 2351, 2453
Sorry, prediction Augustus_model.g40475.t1 fails validation.
(CGG)	 AG	2040-2115	GT	AGG
(GTT)	 AG	2351-2453	GT	GGG
-recovered Augustus_model.g40475.t1, internal, 2040, 2115
-recovered Augustus_model.g40475.t1, internal, 2351, 2453

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 477, 662
Sorry, prediction snap_scaffold_1383-snap.3-T1 fails validation.
(TAC)	 AG	477-662	GT	AGG
-recovered snap_scaffold_1383-snap.3-T1, internal, 477, 662

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2453, rend_intergenic: 1868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2529
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2453, rend_intergenic: 1868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support