-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_138

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 981, 1109
Sorry, prediction snap_scaffold_138-snap.1-T1 fails validation.
(GAT)	 AG	981-1109	GT	AAG
(GGC)	 AG	11028-11330	GT	CAG
(CCC)	 AG	12562-13029	GG	AAG
-recovered snap_scaffold_138-snap.1-T1, terminal, 12562, 13029
-recovered snap_scaffold_138-snap.1-T1, internal, 981, 1109
-recovered snap_scaffold_138-snap.1-T1, internal, 11028, 11330

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59870-T1
Couldn't classify 434, 542
Couldn't classify 1788, 2028
Sorry, prediction snap_scaffold_138-snap.2-T1 fails validation.
(GGC)	 AG	434-542	GT	GGG
(TCC)	 AG	732-889	GT	CAG
(GCT)	 AG	1788-2028	GT	CAG
-recovered snap_scaffold_138-snap.2-T1, internal, 434, 542
-recovered snap_scaffold_138-snap.2-T1, internal, 732, 889
-recovered snap_scaffold_138-snap.2-T1, internal, 1788, 2028

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13029, rend_intergenic: 11069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13096
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 13029, rend_intergenic: 11069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11023
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support