-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1616, 1729
Sorry, prediction GlimmerHMM_glimmerT_61120-T1 fails validation.
(AAG)	 AG	1616-1729	GT	AGG
(AGG)	 AG	1949-2068	AG	AGA
-recovered GlimmerHMM_glimmerT_61120-T1, terminal, 1949, 2068
-recovered GlimmerHMM_glimmerT_61120-T1, internal, 1616, 1729
Couldn't classify 36, 185
Sorry, prediction snap_scaffold_1379-snap.1-T1 fails validation.
(AAC)	 AG	36-185	GT	TGG
(AGG)	 AG	1949-2154	GA	GAG
-recovered snap_scaffold_1379-snap.1-T1, terminal, 1949, 2154
-recovered snap_scaffold_1379-snap.1-T1, internal, 36, 185

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2533
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support