-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1369

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 366, 440
Couldn't classify 2125, 2186
Sorry, prediction snap_scaffold_1369-snap.1-T1 fails validation.
(CTC)	 AG	366-440	GT	TGG
(GCC)	 AG	820-909	GT	AGG
(ATC)	 AG	1035-1157	GT	AGG
(GTG)	 AG	1903-1981	GT	CGG
(ATT)	 AG	2125-2186	GT	CAG
-recovered snap_scaffold_1369-snap.1-T1, internal, 366, 440
-recovered snap_scaffold_1369-snap.1-T1, internal, 820, 909
-recovered snap_scaffold_1369-snap.1-T1, internal, 1035, 1157
-recovered snap_scaffold_1369-snap.1-T1, internal, 1903, 1981
-recovered snap_scaffold_1369-snap.1-T1, internal, 2125, 2186
Couldn't classify 366, 440
Couldn't classify 2125, 2186
Sorry, prediction Augustus_model.g40468.t1 fails validation.
(CTC)	 AG	366-440	GT	TGG
(GCC)	 AG	820-909	GT	AGG
(ATC)	 AG	1035-1157	GT	AGG
(GTG)	 AG	1903-1981	GT	CGG
(ATT)	 AG	2125-2186	GT	CAG
-recovered Augustus_model.g40468.t1, internal, 366, 440
-recovered Augustus_model.g40468.t1, internal, 820, 909
-recovered Augustus_model.g40468.t1, internal, 1035, 1157
-recovered Augustus_model.g40468.t1, internal, 1903, 1981
-recovered Augustus_model.g40468.t1, internal, 2125, 2186
Couldn't classify 1035, 1157
Sorry, prediction GlimmerHMM_glimmerT_61111-T1 fails validation.
(ATG)	 AG	807-953	GT	TCG
(ATC)	 AG	1035-1157	GT	AGG
-recovered GlimmerHMM_glimmerT_61111-T1, initial, 807, 953
-recovered GlimmerHMM_glimmerT_61111-T1, internal, 807, 953
-recovered GlimmerHMM_glimmerT_61111-T1, internal, 1035, 1157

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2555
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support