-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1368

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2103, 2269
Sorry, prediction snap_scaffold_1368-snap.1-T1 fails validation.
(ATG)	 GG	231-410	GT	GTG
(CCG)	 AG	471-554	GT	GGG
(AGG)	 AG	1194-1343	GT	AGG
(AGC)	 AG	2103-2269	GT	TGG
-recovered snap_scaffold_1368-snap.1-T1, initial, 231, 410
-recovered snap_scaffold_1368-snap.1-T1, internal, 471, 554
-recovered snap_scaffold_1368-snap.1-T1, internal, 1194, 1343
-recovered snap_scaffold_1368-snap.1-T1, internal, 2103, 2269
Valid prediction for GlimmerHMM_glimmerT_61110-T1
Couldn't classify 201, 290
Sorry, prediction Augustus_model.g40467.t1 fails validation.
(ACG)	 AG	201-290	GT	GGG
(CCG)	 AG	471-554	GT	GGG
(AGG)	 AG	1194-1457	CC	AGC
-recovered Augustus_model.g40467.t1, terminal, 1194, 1457
-recovered Augustus_model.g40467.t1, internal, 201, 290
-recovered Augustus_model.g40467.t1, internal, 471, 554

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2561
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support