-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1363

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61107-T1
Valid prediction for GlimmerHMM_glimmerT_61106-T1
Couldn't classify 118, 192
Sorry, prediction snap_scaffold_1363-snap.1-T1 fails validation.
(TGA)	 AG	118-192	GT	AAG
(GTA)	 AG	564-617	GT	TTG
(ATG)	 AG	2021-2090	GT	ACG
(GCT)	 AG	2156-2209	AC	AGA
add_exon() Sorry, snap_scaffold_1363-snap.1-T1 2021-2090-initial-1 is invalid.
-recovered snap_scaffold_1363-snap.1-T1, initial, 2021, 2090
-recovered snap_scaffold_1363-snap.1-T1, terminal, 2156, 2209
-recovered snap_scaffold_1363-snap.1-T1, internal, 118, 192
-recovered snap_scaffold_1363-snap.1-T1, internal, 564, 617
-recovered snap_scaffold_1363-snap.1-T1, internal, 2021, 2090
Couldn't classify 118, 192
Sorry, prediction Augustus_model.g40462.t1 fails validation.
(TGA)	 AG	118-192	GT	AAG
(GTA)	 AG	564-621	GT	AAG
-recovered Augustus_model.g40462.t1, terminal, 564, 621
-recovered Augustus_model.g40462.t1, internal, 118, 192
-recovered Augustus_model.g40462.t1, internal, 564, 621

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2581
-exon list size: 8


building trellis

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-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support