-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 428, 549
Sorry, prediction snap_scaffold_1362-snap.2-T1 fails validation.
(CCT)	 AG	428-549	GT	CGG
(TGG)	 AG	1588-1971	GT	GGG
(GGT)	 AG	2277-2464	AC	AGA
-recovered snap_scaffold_1362-snap.2-T1, terminal, 2277, 2464
-recovered snap_scaffold_1362-snap.2-T1, internal, 428, 549
-recovered snap_scaffold_1362-snap.2-T1, internal, 1588, 1971

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 163, 321
Sorry, prediction Augustus_model.g40461.t1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1020	GT	AGG
(GCA)	 AG	2019-2251	AG	GAA
-recovered Augustus_model.g40461.t1, terminal, 2019, 2251
-recovered Augustus_model.g40461.t1, internal, 163, 321
-recovered Augustus_model.g40461.t1, internal, 674, 853
-recovered Augustus_model.g40461.t1, internal, 933, 1020
Couldn't classify 163, 321
Sorry, prediction GlimmerHMM_glimmerT_61105-T1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1013	GT	TGG
(GCA)	 AG	2019-2066	CG	AAC
-recovered GlimmerHMM_glimmerT_61105-T1, terminal, 2019, 2066
-recovered GlimmerHMM_glimmerT_61105-T1, internal, 163, 321
-recovered GlimmerHMM_glimmerT_61105-T1, internal, 674, 853
-recovered GlimmerHMM_glimmerT_61105-T1, internal, 933, 1013
Couldn't classify 163, 321
Sorry, prediction snap_scaffold_1362-snap.1-T1 fails validation.
(GTG)	 AG	163-321	GT	AGG
(GTA)	 AG	674-853	GT	AGG
(GTG)	 AG	933-1020	GT	AGG
(GCA)	 AG	2019-2251	AG	GAA
-recovered snap_scaffold_1362-snap.1-T1, terminal, 2019, 2251
-recovered snap_scaffold_1362-snap.1-T1, internal, 163, 321
-recovered snap_scaffold_1362-snap.1-T1, internal, 674, 853
-recovered snap_scaffold_1362-snap.1-T1, internal, 933, 1020

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2421, rend_intergenic: 428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2583
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2421, rend_intergenic: 428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support