-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1352

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1425, 1574
Couldn't classify 2399, 2510
Sorry, prediction Augustus_model.g40456.t1 fails validation.
(CCT)	 AG	1425-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered Augustus_model.g40456.t1, internal, 1425, 1574
-recovered Augustus_model.g40456.t1, internal, 1826, 1913
-recovered Augustus_model.g40456.t1, internal, 2399, 2510
Valid prediction for CodingQuarry_transcript_13376-T1
Valid prediction for GlimmerHMM_glimmerT_61099-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61099-T1 1826-2007-terminal-1 is invalid.
Couldn't classify 1448, 1574
Couldn't classify 2399, 2510
Sorry, prediction pasa_asmbl_11722.p1 fails validation.
(CAG)	 AG	1448-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered pasa_asmbl_11722.p1, internal, 1448, 1574
-recovered pasa_asmbl_11722.p1, internal, 1826, 1913
-recovered pasa_asmbl_11722.p1, internal, 2399, 2510
Couldn't classify 1425, 1574
Couldn't classify 2399, 2510
Sorry, prediction snap_scaffold_1352-snap.1-T1 fails validation.
(CCT)	 AG	1425-1574	GT	TGG
(GTG)	 AG	1826-1913	GT	AGG
(TAT)	 AG	2399-2510	GT	TGG
-recovered snap_scaffold_1352-snap.1-T1, internal, 1425, 1574
-recovered snap_scaffold_1352-snap.1-T1, internal, 1826, 1913
-recovered snap_scaffold_1352-snap.1-T1, internal, 2399, 2510

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2600
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support