-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1351

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 246, 374
Couldn't classify 2098, 2414
Sorry, prediction snap_scaffold_1351-snap.1-T1 fails validation.
(GTG)	 AG	246-374	GT	AGG
(AGA)	 AG	911-1052	GT	AGG
(GAG)	 AG	1581-1688	GT	CAG
(CTC)	 AG	2098-2414	GT	CAG
-recovered snap_scaffold_1351-snap.1-T1, terminal, 911, 1052
-recovered snap_scaffold_1351-snap.1-T1, internal, 246, 374
-recovered snap_scaffold_1351-snap.1-T1, internal, 911, 1052
-recovered snap_scaffold_1351-snap.1-T1, internal, 1581, 1688
-recovered snap_scaffold_1351-snap.1-T1, internal, 2098, 2414
Couldn't classify 246, 387
Sorry, prediction Augustus_model.g40455.t1 fails validation.
(GTG)	 AG	246-387	GT	GGG
(AGC)	 AG	924-1052	GT	AGG
(GAG)	 AG	1581-1693	GT	AGG
(AAT)	 AG	1869-1880	CT	GAC
-recovered Augustus_model.g40455.t1, terminal, 924, 1052
-recovered Augustus_model.g40455.t1, terminal, 1869, 1880
-recovered Augustus_model.g40455.t1, internal, 246, 387
-recovered Augustus_model.g40455.t1, internal, 924, 1052
-recovered Augustus_model.g40455.t1, internal, 1581, 1693
Couldn't classify 2098, 2414
Sorry, prediction GlimmerHMM_glimmerT_61098-T1 fails validation.
(ATG)	 AG	913-994	GT	TGG
(GTG)	 AG	1548-1688	GT	CAG
(CTC)	 AG	2098-2414	GT	CAG
-recovered GlimmerHMM_glimmerT_61098-T1, initial, 913, 994
-recovered GlimmerHMM_glimmerT_61098-T1, internal, 913, 994
-recovered GlimmerHMM_glimmerT_61098-T1, internal, 1548, 1688
-recovered GlimmerHMM_glimmerT_61098-T1, internal, 2098, 2414
Valid prediction for GlimmerHMM_glimmerT_61097-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2601
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support