-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1338

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1338-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1, 103
Couldn't classify 496, 602
Sorry, prediction pasa_asmbl_11716.p1 fails validation.
(CAG)	 TG	1-103	GT	AGG
(GCG)	 AG	235-390	GT	GGG
(GTG)	 AG	496-602	GG	CTG
-recovered pasa_asmbl_11716.p1, internal, 235, 390
Couldn't classify 1, 103
Sorry, prediction Augustus_model.g40449.t1 fails validation.
(CAG)	 TG	1-103	GT	AGG
(GCG)	 AG	235-390	GT	GGG
(GTG)	 AG	496-603	GT	TGG
(AGG)	 AG	841-890	AA	AGA
-recovered Augustus_model.g40449.t1, terminal, 841, 890
-recovered Augustus_model.g40449.t1, internal, 235, 390
-recovered Augustus_model.g40449.t1, internal, 496, 603
Valid prediction for GlimmerHMM_glimmerT_61088-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2623
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support