-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1325

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61084-T1
Couldn't classify 18, 89
Couldn't classify 2232, 2615
Sorry, prediction snap_scaffold_1325-snap.1-T1 fails validation.
(GAA)	 AG	18-89	GT	AGG
(CGC)	 AG	609-842	GT	AGG
(TAC)	 AG	1513-1603	GT	AGG
(TCT)	 AG	2031-2111	GT	AGG
(ATT)	 AG	2232-2615	GT	AGG
-recovered snap_scaffold_1325-snap.1-T1, internal, 18, 89
-recovered snap_scaffold_1325-snap.1-T1, internal, 609, 842
-recovered snap_scaffold_1325-snap.1-T1, internal, 1513, 1603
-recovered snap_scaffold_1325-snap.1-T1, internal, 2031, 2111
-recovered snap_scaffold_1325-snap.1-T1, internal, 2232, 2615
Couldn't classify 609, 842
Couldn't classify 2232, 2653
Sorry, prediction pasa_asmbl_11712.p1 fails validation.
(CGC)	 AG	609-842	GT	AGG
(AAC)	 AG	1444-1603	GT	AGG
(TCT)	 AG	2031-2090	GT	ATG
(ATT)	 AG	2232-2653	AC	TGA
-recovered pasa_asmbl_11712.p1, internal, 609, 842
-recovered pasa_asmbl_11712.p1, internal, 1444, 1603
-recovered pasa_asmbl_11712.p1, internal, 2031, 2090
Valid prediction for GlimmerHMM_glimmerT_61085-T1
Couldn't classify 1, 89
Couldn't classify 2232, 2655
Sorry, prediction HiQ_model.g40447.t1 fails validation.
(TGG)	 AC	1-89	GT	AGG
(CGC)	 AG	609-842	GT	AGG
(AAC)	 AG	1444-1603	GT	AGG
(TCT)	 AG	2031-2090	GT	ATG
(ATT)	 AG	2232-2655		AC
-recovered HiQ_model.g40447.t1, internal, 609, 842
-recovered HiQ_model.g40447.t1, internal, 1444, 1603
-recovered HiQ_model.g40447.t1, internal, 2031, 2090

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 256, 303
Couldn't classify 1848, 2188
Sorry, prediction snap_scaffold_1325-snap.2-T1 fails validation.
(TAA)	 AG	256-303	GT	AGG
(ACA)	 AG	371-473	GT	ATG
(CTG)	 AG	491-568	GT	TGG
(CTC)	 AG	1111-1275	GT	GGG
(AGT)	 AG	1848-2188	GT	GAG
-recovered snap_scaffold_1325-snap.2-T1, internal, 256, 303
-recovered snap_scaffold_1325-snap.2-T1, internal, 371, 473
-recovered snap_scaffold_1325-snap.2-T1, internal, 491, 568
-recovered snap_scaffold_1325-snap.2-T1, internal, 1111, 1275
-recovered snap_scaffold_1325-snap.2-T1, internal, 1848, 2188

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2615, rend_intergenic: 468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2655
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2615, rend_intergenic: 468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support