-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1323

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 137, 253
Couldn't classify 2009, 2088
Sorry, prediction snap_scaffold_1323-snap.2-T1 fails validation.
(CAG)	 AG	137-253	GT	TGG
(GCT)	 AG	1856-1929	GT	GGG
(ATC)	 AG	2009-2088	GT	AGG
-recovered snap_scaffold_1323-snap.2-T1, internal, 137, 253
-recovered snap_scaffold_1323-snap.2-T1, internal, 1856, 1929
-recovered snap_scaffold_1323-snap.2-T1, internal, 2009, 2088

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 651, 795
Couldn't classify 2383, 2565
Sorry, prediction Augustus_model.g40446.t1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	2383-2565	GT	AGG
-recovered Augustus_model.g40446.t1, internal, 651, 795
-recovered Augustus_model.g40446.t1, internal, 2383, 2565
Couldn't classify 651, 795
Couldn't classify 2383, 2565
Sorry, prediction snap_scaffold_1323-snap.1-T1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	1256-1396	GT	AGG
(AGC)	 AG	2383-2565	GT	AGG
-recovered snap_scaffold_1323-snap.1-T1, internal, 651, 795
-recovered snap_scaffold_1323-snap.1-T1, internal, 1256, 1396
-recovered snap_scaffold_1323-snap.1-T1, internal, 2383, 2565
Couldn't classify 651, 795
Couldn't classify 2383, 2564
Sorry, prediction pasa_asmbl_11711.p1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	2383-2564	GG	CAG
-recovered pasa_asmbl_11711.p1, internal, 651, 795
Couldn't classify 651, 795
Sorry, prediction GlimmerHMM_glimmerT_61083-T1 fails validation.
(ATC)	 AG	651-795	GT	GGG
(AGC)	 AG	1256-1410	AA	AGA
-recovered GlimmerHMM_glimmerT_61083-T1, terminal, 1256, 1410
-recovered GlimmerHMM_glimmerT_61083-T1, internal, 651, 795
Valid prediction for GlimmerHMM_glimmerT_61082-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2010, rend_intergenic: 137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2660
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2010, rend_intergenic: 137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support