-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 532, 564
Sorry, prediction Augustus_model.g40443.t1 fails validation.
(TGT)	 AG	532-564	GT	GGG
(TCG)	 AG	656-750	CA	AGC
-recovered Augustus_model.g40443.t1, terminal, 656, 750
-recovered Augustus_model.g40443.t1, internal, 532, 564
Couldn't classify 1308, 1500
Sorry, prediction snap_scaffold_1320-snap.1-T1 fails validation.
(ATG)	 CC	392-404	GT	AAG
(TGT)	 AG	532-564	GT	GGG
(TCG)	 AG	656-746	GT	AGG
(GTC)	 AG	1308-1500	GT	AGG
-recovered snap_scaffold_1320-snap.1-T1, initial, 392, 404
-recovered snap_scaffold_1320-snap.1-T1, internal, 532, 564
-recovered snap_scaffold_1320-snap.1-T1, internal, 656, 746
-recovered snap_scaffold_1320-snap.1-T1, internal, 1308, 1500
add_exon() Sorry, GlimmerHMM_glimmerT_61080-T1 1325-1752-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2669
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support