-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_132

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_132-snap.1-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59862-T1
Valid prediction for Augustus_model.g39656.t1
Valid prediction for GlimmerHMM_glimmerT_59863-T1
Valid prediction for GlimmerHMM_glimmerT_59864-T1
Valid prediction for GlimmerHMM_glimmerT_59865-T1
Valid prediction for Augustus_model.g39655.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_132-snap.4-T1
Couldn't classify 7224, 7435
Sorry, prediction snap_scaffold_132-snap.2-T1 fails validation.
(ATG)	 GA	3716-3761	GT	AGG
(AGC)	 AG	5042-5481	GT	TTG
(AGT)	 AG	5761-5866	GT	TGG
(CTG)	 AG	6621-6756	GT	CCG
(GAG)	 AG	6822-6909	GT	AGG
(AAC)	 AG	7088-7180	GT	ACG
(CAC)	 AG	7224-7435	GT	GAG
-recovered snap_scaffold_132-snap.2-T1, initial, 3716, 3761
-recovered snap_scaffold_132-snap.2-T1, internal, 5042, 5481
-recovered snap_scaffold_132-snap.2-T1, internal, 5761, 5866
-recovered snap_scaffold_132-snap.2-T1, internal, 6621, 6756
-recovered snap_scaffold_132-snap.2-T1, internal, 6822, 6909
-recovered snap_scaffold_132-snap.2-T1, internal, 7088, 7180
-recovered snap_scaffold_132-snap.2-T1, internal, 7224, 7435
Valid prediction for snap_scaffold_132-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8482, rend_intergenic: 6013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13447
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8482, rend_intergenic: 6013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support