-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1312

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40441.t1
Valid prediction for GlimmerHMM_glimmerT_61076-T1
Valid prediction for snap_scaffold_1312-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61075-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 149
Couldn't classify 2527, 2584
Sorry, prediction snap_scaffold_1312-snap.1-T1 fails validation.
(TCC)	 AG	55-149	GT	GGG
(TGT)	 AG	490-588	GT	AGG
(TCC)	 AG	2527-2584	GT	AGG
-recovered snap_scaffold_1312-snap.1-T1, internal, 55, 149
-recovered snap_scaffold_1312-snap.1-T1, internal, 490, 588
-recovered snap_scaffold_1312-snap.1-T1, internal, 2527, 2584

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2635, rend_intergenic: 159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2689
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2635, rend_intergenic: 159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support