-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_131

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59861-T1
Valid prediction for snap_scaffold_131-snap.2-T1
Valid prediction for Augustus_model.g39654.t1
Valid prediction for GlimmerHMM_glimmerT_59859-T1
Valid prediction for GlimmerHMM_glimmerT_59860-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59858-T1
Couldn't classify 9263, 9363
Sorry, prediction pasa_asmbl_11707.p2 fails validation.
(GGG)	 CA	9263-9363	GT	AGG
(GAT)	 AG	10599-10650	GT	CAG
(GAA)	 AG	10827-10979	AC	AGA
-recovered pasa_asmbl_11707.p2, terminal, 10827, 10979
-recovered pasa_asmbl_11707.p2, internal, 10599, 10650
Couldn't classify 251, 313
Sorry, prediction snap_scaffold_131-snap.3-T1 fails validation.
(TAT)	 AG	251-313	GT	AGG
(TAT)	 AG	1009-1148	GT	AGG
(AAC)	 AG	1619-1655	CA	GAC
-recovered snap_scaffold_131-snap.3-T1, terminal, 1619, 1655
-recovered snap_scaffold_131-snap.3-T1, internal, 251, 313
-recovered snap_scaffold_131-snap.3-T1, internal, 1009, 1148
Valid prediction for CodingQuarry_transcript_13370-T1
Couldn't classify 10599, 10650
Sorry, prediction snap_scaffold_131-snap.1-T1 fails validation.
(ATG)	 CA	3668-3769	GT	GGG
(GGT)	 AG	4384-4515	GT	AGG
(CTG)	 AG	5179-5205	GT	GGG
(GTA)	 AG	9106-9115	GT	CAG
(GGT)	 AG	9264-9363	GT	AGG
(GAT)	 AG	10599-10650	GT	CAG
-recovered snap_scaffold_131-snap.1-T1, initial, 3668, 3769
-recovered snap_scaffold_131-snap.1-T1, internal, 4384, 4515
-recovered snap_scaffold_131-snap.1-T1, internal, 5179, 5205
-recovered snap_scaffold_131-snap.1-T1, internal, 9106, 9115
-recovered snap_scaffold_131-snap.1-T1, internal, 9264, 9363
-recovered snap_scaffold_131-snap.1-T1, internal, 10599, 10650
Valid prediction for HiQ_model.g39653.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9906, rend_intergenic: 8503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13573
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 9906, rend_intergenic: 8503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support