-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1309

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61072-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61072-T1 1534-1823-terminal-1 is invalid.
Couldn't classify 580, 773
Sorry, prediction Augustus_model.g40438.t1 fails validation.
(CAG)	 AG	580-773	GT	AGG
(GAG)	 AG	1534-1823	GG	GAG
-recovered Augustus_model.g40438.t1, terminal, 1534, 1823
-recovered Augustus_model.g40438.t1, internal, 580, 773
Couldn't classify 580, 773
Sorry, prediction snap_scaffold_1309-snap.2-T1 fails validation.
(CAG)	 AG	580-773	GT	AGG
(GAG)	 AG	1534-1823	GG	GAG
-recovered snap_scaffold_1309-snap.2-T1, terminal, 1534, 1823
-recovered snap_scaffold_1309-snap.2-T1, internal, 580, 773

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 920, 1099
Couldn't classify 2126, 2231
Sorry, prediction snap_scaffold_1309-snap.1-T1 fails validation.
(GTC)	 AG	920-1099	GT	AGG
(CTC)	 AG	1968-2045	GT	AGG
(GGT)	 AG	2126-2231	GT	AGG
-recovered snap_scaffold_1309-snap.1-T1, terminal, 1968, 2045
-recovered snap_scaffold_1309-snap.1-T1, internal, 920, 1099
-recovered snap_scaffold_1309-snap.1-T1, internal, 1968, 2045
-recovered snap_scaffold_1309-snap.1-T1, internal, 2126, 2231

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1793, rend_intergenic: 580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2712
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1793, rend_intergenic: 580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support