-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_8813240-9101114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g21389.t1
Valid prediction for snap_scaffold_13-snap.1632-T1
Valid prediction for GlimmerHMM_glimmerT_32061-T1
Valid prediction for GlimmerHMM_glimmerT_32066-T1
Valid prediction for snap_scaffold_13-snap.1636-T1
Valid prediction for snap_scaffold_13-snap.1633-T1
Valid prediction for snap_scaffold_13-snap.1629-T1
Valid prediction for GlimmerHMM_glimmerT_32076-T1
Valid prediction for CodingQuarry_transcript_13182-T1
Couldn't classify 95873, 96028
Sorry, prediction pasa_asmbl_11157.p1 fails validation.
(GTG)	 CA	95873-96028	GT	CCG
(ATT)	 AG	98829-99109	GT	AGG
(GAA)	 AG	99194-99251	GT	TGG
(TTC)	 AG	99341-99517	GT	TTG
(GTG)	 AG	99757-99885	TG	AGT
-recovered pasa_asmbl_11157.p1, terminal, 99757, 99885
-recovered pasa_asmbl_11157.p1, internal, 98829, 99109
-recovered pasa_asmbl_11157.p1, internal, 99194, 99251
-recovered pasa_asmbl_11157.p1, internal, 99341, 99517
Valid prediction for Augustus_model.g21376.t1
Valid prediction for snap_scaffold_13-snap.1619-T1
Valid prediction for Augustus_model.g21394.t1
Valid prediction for snap_scaffold_13-snap.1616-T1
Valid prediction for GlimmerHMM_glimmerT_32074-T1
Valid prediction for pasa_asmbl_11169.p1
Valid prediction for snap_scaffold_13-snap.1609-T1
Couldn't classify 23522, 23778
Sorry, prediction pasa_asmbl_11150.p1 fails validation.
(ATG)	 TA	21925-22140	GT	AGG
(GAG)	 AG	22258-22353	GT	AGG
(GAC)	 AG	22461-22694	GT	AGG
(TTG)	 AG	23125-23144	GT	TGG
(GGC)	 AG	23278-23402	GT	AGG
(GAG)	 AG	23522-23778	AG	GCA
-recovered pasa_asmbl_11150.p1, initial, 21925, 22140
-recovered pasa_asmbl_11150.p1, internal, 22258, 22353
-recovered pasa_asmbl_11150.p1, internal, 22461, 22694
-recovered pasa_asmbl_11150.p1, internal, 23125, 23144
-recovered pasa_asmbl_11150.p1, internal, 23278, 23402
Valid prediction for GlimmerHMM_glimmerT_32057-T1
Valid prediction for HiQ_model.g21392.t1
Valid prediction for snap_scaffold_13-snap.1627-T1
Valid prediction for Augustus_model.g21379.t1
Valid prediction for GlimmerHMM_glimmerT_32059-T1
Valid prediction for GlimmerHMM_glimmerT_32073-T1
Valid prediction for Augustus_model.g21382.t1
Valid prediction for snap_scaffold_13-snap.1620-T1
Valid prediction for GlimmerHMM_glimmerT_32064-T1
Valid prediction for snap_scaffold_13-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_32062-T1
Valid prediction for snap_scaffold_13-snap.1634-T1
Valid prediction for GlimmerHMM_glimmerT_32052-T1
Valid prediction for snap_scaffold_13-snap.1621-T1
Couldn't classify 77616, 77667
Sorry, prediction pasa_asmbl_11153.p1 fails validation.
(CGC)	 CA	77616-77667	GT	AGG
(GCC)	 AG	77940-78081	GT	GGG
(AAT)	 AG	78298-78430	GT	AGG
(ACT)	 AG	78672-78869	GT	AGG
(AAA)	 AG	79027-79267	GT	AGG
(ATT)	 AG	79583-79711	GT	AAG
(GCG)	 AG	79824-79987	GT	CTG
(ATG)	 AG	80179-80332	GT	AGG
(GTA)	 AG	80442-80513	GT	AGG
(AAA)	 AG	80610-80761	TG	GAT
-recovered pasa_asmbl_11153.p1, initial, 80179, 80332
-recovered pasa_asmbl_11153.p1, terminal, 80610, 80761
-recovered pasa_asmbl_11153.p1, internal, 77940, 78081
-recovered pasa_asmbl_11153.p1, internal, 78298, 78430
-recovered pasa_asmbl_11153.p1, internal, 78672, 78869
-recovered pasa_asmbl_11153.p1, internal, 79027, 79267
-recovered pasa_asmbl_11153.p1, internal, 79583, 79711
-recovered pasa_asmbl_11153.p1, internal, 79824, 79987
-recovered pasa_asmbl_11153.p1, internal, 80179, 80332
-recovered pasa_asmbl_11153.p1, internal, 80442, 80513
Valid prediction for Augustus_model.g21383.t1
Valid prediction for snap_scaffold_13-snap.1608-T1
Valid prediction for CodingQuarry_transcript_13184-T1
Valid prediction for GlimmerHMM_glimmerT_32071-T1
Valid prediction for GlimmerHMM_glimmerT_32068-T1
Valid prediction for Augustus_model.g21385.t1
Valid prediction for Augustus_model.g21380.t1
Valid prediction for Augustus_model.g21378.t1
Valid prediction for snap_scaffold_13-snap.1606-T1
Valid prediction for snap_scaffold_13-snap.1631-T1
Valid prediction for snap_scaffold_13-snap.1614-T1
Valid prediction for GlimmerHMM_glimmerT_32058-T1
Valid prediction for pasa_asmbl_11163.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.1615-T1
Valid prediction for snap_scaffold_13-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_32053-T1
Valid prediction for snap_scaffold_13-snap.1605-T1
Valid prediction for GlimmerHMM_glimmerT_32069-T1
Valid prediction for CodingQuarry_transcript_13180-T1
Valid prediction for Augustus_model.g21388.t1
Valid prediction for snap_scaffold_13-snap.1625-T1
Valid prediction for Augustus_model.g21390.t1
Valid prediction for snap_scaffold_13-snap.1611-T1
Couldn't classify 204448, 204615
Couldn't classify 205046, 205072
Sorry, prediction pasa_asmbl_9995.p1 fails validation.
(TTT)	 AT	204448-204615	GT	TGG
(GCT)	 AG	204710-204892	GT	AGG
(GAT)	 AG	205046-205072	AG	CCA
-recovered pasa_asmbl_9995.p1, internal, 204710, 204892
Valid prediction for Augustus_model.g21373.t1
Valid prediction for snap_scaffold_13-snap.1624-T1
Valid prediction for snap_scaffold_13-snap.1602-T1
Valid prediction for snap_scaffold_13-snap.1618-T1
Valid prediction for pasa_asmbl_10000.p1
Valid prediction for GlimmerHMM_glimmerT_32075-T1
Valid prediction for GlimmerHMM_glimmerT_32060-T1
Valid prediction for pasa_asmbl_9996.p1
Valid prediction for snap_scaffold_13-snap.1607-T1
Valid prediction for snap_scaffold_13-snap.1613-T1
Valid prediction for snap_scaffold_13-snap.1622-T1
Valid prediction for pasa_asmbl_9994.p1
Valid prediction for GlimmerHMM_glimmerT_32055-T1
Valid prediction for CodingQuarry_transcript_13179-T1
Valid prediction for snap_scaffold_13-snap.1604-T1
Valid prediction for Augustus_model.g21377.t1
Valid prediction for GlimmerHMM_glimmerT_32070-T1
Valid prediction for CodingQuarry_transcript_13183-T1
Valid prediction for snap_scaffold_13-snap.1612-T1
Valid prediction for GlimmerHMM_glimmerT_32067-T1
Valid prediction for pasa_asmbl_10005.p1
Valid prediction for HiQ_model.g21374.t1
Valid prediction for snap_scaffold_13-snap.1610-T1
Valid prediction for CodingQuarry_transcript_13181-T1
Valid prediction for GlimmerHMM_glimmerT_32072-T1
Valid prediction for Augustus_model.g21381.t1
Valid prediction for GlimmerHMM_glimmerT_32056-T1
Valid prediction for snap_scaffold_13-snap.1635-T1
Valid prediction for snap_scaffold_13-snap.1628-T1
Valid prediction for Augustus_model.g21393.t1
Valid prediction for GlimmerHMM_glimmerT_32065-T1
Valid prediction for snap_scaffold_13-snap.1630-T1
Valid prediction for pasa_asmbl_10003.p1
Valid prediction for GlimmerHMM_glimmerT_32063-T1
Valid prediction for Augustus_model.g21384.t1
Valid prediction for GlimmerHMM_glimmerT_32051-T1
Valid prediction for pasa_asmbl_9990.p1
Valid prediction for GlimmerHMM_glimmerT_32049-T1
Valid prediction for GlimmerHMM_glimmerT_32050-T1
Valid prediction for snap_scaffold_13-snap.1617-T1
Valid prediction for snap_scaffold_13-snap.1603-T1
Valid prediction for GlimmerHMM_glimmerT_32054-T1
Valid prediction for Augustus_model.g21386.t1
Valid prediction for Augustus_model.g21387.t1
Valid prediction for HiQ_model.g21391.t1
Valid prediction for Augustus_model.g21375.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43172, rend_intergenic: 36294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74255, rend_intergenic: 62428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 285036, rend_intergenic: 279587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 287875
-exon list size: 365


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.5    
2.7    
3.0    
3.3    
3.5    
3.8    
4.1    
4.4    
4.6    
4.9    
5.2    
5.4    
5.7    
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6.8    
7.1    
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7.6    
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8.2    
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8.7    
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9.3    
9.5    
9.8    
10.1    
10.4    
10.6    
10.9    
11.2    
11.4    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.4    
13.6    
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14.2    
14.4    
14.7    
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15.3    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.3    
19.6    
19.9    
20.2    
20.4    
20.7    
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21.3    
21.5    
21.8    
22.1    
22.3    
22.6    
22.9    
23.2    
23.4    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.8    
28.1    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.2    
30.5    
30.8    
31.1    
31.3    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
36.0    
36.2    
36.5    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
42.0    
42.2    
42.5    
42.8    
43.1    
43.3    
43.6    
43.9    
44.1    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.0    
46.3    
46.6    
46.9    
47.1    
47.4    
47.7    
48.0    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.0    
52.3    
52.6    
52.9    
53.1    
53.4    
53.7    
54.0    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.9    
56.1    
56.4    
56.7    
56.9    
57.2    
57.5    
57.8    
58.0    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.9    
62.1    
62.4    
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62.9    
63.2    
63.5    
63.8    
64.0    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.7    
68.9    
69.2    
69.5    
69.8    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
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71.9    
72.2    
72.5    
72.8    
73.0    
73.3    
73.6    
73.8    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.6    
76.8    
77.1    
77.4    
77.7    
77.9    
78.2    
78.5    
78.7    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.7    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.6    
88.8    
89.1    
89.4    
89.6    
89.9    
90.2    
90.5    
90.7    
91.0    
91.3    
91.6    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.7    
94.0    
94.3    
94.6    
94.8    
95.1    
95.4    
95.6    
95.9    
96.2    
96.5    
96.7    
97.0    
97.3    
97.5    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 43172, rend_intergenic: 36294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74255, rend_intergenic: 62428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 285036, rend_intergenic: 279587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support