-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_8366595-8624460

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g21340.t1
Valid prediction for snap_scaffold_13-snap.1555-T1
Valid prediction for GlimmerHMM_glimmerT_32019-T1
Valid prediction for Augustus_model.g21348.t1
Valid prediction for snap_scaffold_13-snap.1515-T1
Valid prediction for snap_scaffold_13-snap.1541-T1
Valid prediction for CodingQuarry_transcript_13168-T1
Valid prediction for Augustus_model.g21331.t1
Valid prediction for snap_scaffold_13-snap.1539-T1
Valid prediction for GlimmerHMM_glimmerT_32005-T1
Valid prediction for snap_scaffold_13-snap.1514-T1
Valid prediction for snap_scaffold_13-snap.1554-T1
Valid prediction for snap_scaffold_13-snap.1551-T1
Valid prediction for snap_scaffold_13-snap.1553-T1
Valid prediction for snap_scaffold_13-snap.1521-T1
Valid prediction for snap_scaffold_13-snap.1556-T1
Valid prediction for CodingQuarry_transcript_13170-T1
Valid prediction for snap_scaffold_13-snap.1549-T1
Valid prediction for snap_scaffold_13-snap.1516-T1
Valid prediction for GlimmerHMM_glimmerT_32011-T1
Valid prediction for Augustus_model.g21330.t1
Valid prediction for Augustus_model.g21334.t1
Valid prediction for snap_scaffold_13-snap.1546-T1
Valid prediction for Augustus_model.g21351.t1
Valid prediction for HiQ_model.g21346.t1
Valid prediction for GlimmerHMM_glimmerT_32000-T1
Valid prediction for GlimmerHMM_glimmerT_32007-T1
Valid prediction for Augustus_model.g21339.t1
Valid prediction for GlimmerHMM_glimmerT_32013-T1
Valid prediction for GlimmerHMM_glimmerT_32008-T1
Valid prediction for Augustus_model.g21347.t1
Valid prediction for snap_scaffold_13-snap.1559-T1
Valid prediction for snap_scaffold_13-snap.1550-T1
Valid prediction for snap_scaffold_13-snap.1537-T1
Valid prediction for snap_scaffold_13-snap.1530-T1
Valid prediction for Augustus_model.g21337.t1
Valid prediction for pasa_asmbl_11134.p1
Valid prediction for snap_scaffold_13-snap.1545-T1
Valid prediction for GlimmerHMM_glimmerT_32010-T1
Valid prediction for snap_scaffold_13-snap.1523-T1
Valid prediction for GlimmerHMM_glimmerT_32021-T1
Valid prediction for Augustus_model.g21342.t1
Valid prediction for Augustus_model.g21343.t1
Valid prediction for snap_scaffold_13-snap.1527-T1
Valid prediction for snap_scaffold_13-snap.1561-T1
Valid prediction for snap_scaffold_13-snap.1558-T1
Valid prediction for snap_scaffold_13-snap.1535-T1
Valid prediction for GlimmerHMM_glimmerT_31997-T1
Valid prediction for GlimmerHMM_glimmerT_32003-T1
Valid prediction for snap_scaffold_13-snap.1540-T1
Valid prediction for pasa_asmbl_11135.p1
Valid prediction for snap_scaffold_13-snap.1534-T1
Valid prediction for GlimmerHMM_glimmerT_32016-T1
Valid prediction for Augustus_model.g21350.t1
Valid prediction for snap_scaffold_13-snap.1557-T1
Valid prediction for Augustus_model.g21349.t1
Valid prediction for snap_scaffold_13-snap.1543-T1
Valid prediction for snap_scaffold_13-snap.1533-T1
Sorry, intron length (7) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.1518-T1
Valid prediction for snap_scaffold_13-snap.1564-T1
Valid prediction for snap_scaffold_13-snap.1526-T1
Valid prediction for GlimmerHMM_glimmerT_31996-T1
Valid prediction for Augustus_model.g21341.t1
Valid prediction for GlimmerHMM_glimmerT_32009-T1
Valid prediction for GlimmerHMM_glimmerT_32006-T1
Valid prediction for Augustus_model.g21335.t1
Valid prediction for Augustus_model.g21338.t1
Valid prediction for GlimmerHMM_glimmerT_32017-T1
Valid prediction for GlimmerHMM_glimmerT_32012-T1
Valid prediction for GlimmerHMM_glimmerT_32014-T1
Valid prediction for snap_scaffold_13-snap.1538-T1
Valid prediction for Augustus_model.g21333.t1
Valid prediction for Augustus_model.g21336.t1
Valid prediction for GlimmerHMM_glimmerT_32018-T1
Valid prediction for snap_scaffold_13-snap.1522-T1
Valid prediction for Augustus_model.g21332.t1
Valid prediction for pasa_asmbl_9965.p1
Valid prediction for snap_scaffold_13-snap.1536-T1
Valid prediction for snap_scaffold_13-snap.1542-T1
Valid prediction for snap_scaffold_13-snap.1552-T1
Valid prediction for GlimmerHMM_glimmerT_31995-T1
Valid prediction for GlimmerHMM_glimmerT_32004-T1
Valid prediction for HiQ_model.g21345.t1
Valid prediction for GlimmerHMM_glimmerT_32020-T1
Valid prediction for snap_scaffold_13-snap.1529-T1
Valid prediction for GlimmerHMM_glimmerT_31998-T1
Valid prediction for GlimmerHMM_glimmerT_32002-T1
Valid prediction for snap_scaffold_13-snap.1547-T1
Valid prediction for snap_scaffold_13-snap.1532-T1
Valid prediction for snap_scaffold_13-snap.1563-T1
Valid prediction for snap_scaffold_13-snap.1519-T1
Valid prediction for CodingQuarry_transcript_13169-T1
Valid prediction for Augustus_model.g21344.t1
Valid prediction for snap_scaffold_13-snap.1528-T1
Valid prediction for snap_scaffold_13-snap.1524-T1
Valid prediction for GlimmerHMM_glimmerT_32001-T1
Valid prediction for GlimmerHMM_glimmerT_32015-T1
Valid prediction for snap_scaffold_13-snap.1513-T1
Valid prediction for snap_scaffold_13-snap.1517-T1
Valid prediction for GlimmerHMM_glimmerT_31999-T1
Valid prediction for snap_scaffold_13-snap.1560-T1
Valid prediction for snap_scaffold_13-snap.1520-T1
Valid prediction for GlimmerHMM_glimmerT_32022-T1
Valid prediction for snap_scaffold_13-snap.1531-T1
Valid prediction for snap_scaffold_13-snap.1525-T1
Valid prediction for GlimmerHMM_glimmerT_31994-T1
Valid prediction for snap_scaffold_13-snap.1544-T1
Valid prediction for snap_scaffold_13-snap.1548-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22425, rend_intergenic: 5879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34282, rend_intergenic: 22488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38337, rend_intergenic: 35672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44107, rend_intergenic: 39173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49710, rend_intergenic: 47152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73711, rend_intergenic: 50015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89827, rend_intergenic: 78160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98507, rend_intergenic: 90242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103473, rend_intergenic: 100264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109079, rend_intergenic: 103595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130936, rend_intergenic: 109558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138794, rend_intergenic: 135431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159067, rend_intergenic: 155178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165887, rend_intergenic: 163029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169373, rend_intergenic: 165892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185075, rend_intergenic: 172322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194171, rend_intergenic: 185452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234943, rend_intergenic: 230577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238137, rend_intergenic: 235071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 257866
-exon list size: 535


building trellis

0.2    
0.4    
0.6    
0.7    
0.9    
1.1    
1.3    
1.5    
1.7    
1.9    
2.0    
2.2    
2.4    
2.6    
2.8    
3.0    
3.2    
3.4    
3.5    
3.7    
3.9    
4.1    
4.3    
4.5    
4.7    
4.8    
5.0    
5.2    
5.4    
5.6    
5.8    
6.0    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.4    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
8.9    
9.1    
9.3    
9.5    
9.7    
9.9    
10.1    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.5    
11.7    
11.9    
12.1    
12.3    
12.5    
12.7    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
14.0    
14.2    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.6    
15.8    
16.0    
16.2    
16.4    
16.6    
16.8    
16.9    
17.1    
17.3    
17.5    
17.7    
17.9    
18.1    
18.2    
18.4    
18.6    
18.8    
19.0    
19.2    
19.4    
19.6    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.6    
23.8    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.4    
26.6    
26.8    
27.0    
27.2    
27.4    
27.6    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.2    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.2    
37.4    
37.6    
37.8    
38.0    
38.2    
38.4    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.5    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.4    
80.6    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.4    
99.6    
99.8    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 22425, rend_intergenic: 5879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34282, rend_intergenic: 22488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38337, rend_intergenic: 35672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44107, rend_intergenic: 39173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49710, rend_intergenic: 47152  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73711, rend_intergenic: 50015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89827, rend_intergenic: 78160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98507, rend_intergenic: 90242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103473, rend_intergenic: 100264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109079, rend_intergenic: 103595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130936, rend_intergenic: 109558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138794, rend_intergenic: 135431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159067, rend_intergenic: 155178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165887, rend_intergenic: 163029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169373, rend_intergenic: 165892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185075, rend_intergenic: 172322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194171, rend_intergenic: 185452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234943, rend_intergenic: 230577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238137, rend_intergenic: 235071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support