-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_7916807-8195840 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.1427-T1 Couldn't classify 209138, 209250 Sorry, prediction pasa_asmbl_11109.p1 fails validation. (AGA) GG 209138-209250 GT AGG (GGC) AG 209385-209733 TG GAT -recovered pasa_asmbl_11109.p1, terminal, 209385, 209733 Valid prediction for pasa_asmbl_11098.p1 Couldn't classify 195390, 195413 Sorry, prediction pasa_asmbl_11104.p2 fails validation. (ACC) GG 195390-195413 GT TGG (GCT) AG 195949-196077 GT AGG (ACC) AG 196165-196247 GT AAG (CAC) AG 196675-196738 AC AAA -recovered pasa_asmbl_11104.p2, terminal, 196675, 196738 -recovered pasa_asmbl_11104.p2, internal, 195949, 196077 -recovered pasa_asmbl_11104.p2, internal, 196165, 196247 Valid prediction for HiQ_model.g21287.t1 Valid prediction for snap_scaffold_13-snap.1447-T1 Valid prediction for snap_scaffold_13-snap.1444-T1 Valid prediction for snap_scaffold_13-snap.1453-T1 Valid prediction for Augustus_model.g21307.t1 Valid prediction for Augustus_model.g21289.t1 Valid prediction for GlimmerHMM_glimmerT_31948-T1 Valid prediction for GlimmerHMM_glimmerT_31944-T1 Valid prediction for snap_scaffold_13-snap.1449-T1 Valid prediction for GlimmerHMM_glimmerT_31960-T1 Couldn't classify 150464, 151426 Sorry, prediction pasa_asmbl_11096.p1 fails validation. (CTT) TT 150464-151426 CT GAC Valid prediction for snap_scaffold_13-snap.1433-T1 Valid prediction for snap_scaffold_13-snap.1424-T1 Couldn't classify 190981, 191034 Sorry, prediction pasa_asmbl_11102.p1 fails validation. (CAG) CT 190981-191034 GT CAG (ATC) AG 191154-191250 GT CGG (ACC) AG 191340-191486 GT AGG (TGT) AG 191586-191757 GT AGG (GGG) AG 191866-191927 GT AGG (GTT) AG 192014-192132 GT AGG (GGT) AG 192281-192364 AC AAA add_exon() Sorry, pasa_asmbl_11102.p1 191340-191486-terminal-1 is invalid. -recovered pasa_asmbl_11102.p1, terminal, 191340, 191486 -recovered pasa_asmbl_11102.p1, terminal, 192281, 192364 -recovered pasa_asmbl_11102.p1, internal, 191154, 191250 -recovered pasa_asmbl_11102.p1, internal, 191340, 191486 -recovered pasa_asmbl_11102.p1, internal, 191586, 191757 -recovered pasa_asmbl_11102.p1, internal, 191866, 191927 -recovered pasa_asmbl_11102.p1, internal, 192014, 192132 Valid prediction for snap_scaffold_13-snap.1428-T1 Valid prediction for snap_scaffold_13-snap.1440-T1 Valid prediction for HiQ_model.g21283.t1 Valid prediction for snap_scaffold_13-snap.1437-T1 Valid prediction for snap_scaffold_13-snap.1450-T1 Valid prediction for snap_scaffold_13-snap.1454-T1 Valid prediction for snap_scaffold_13-snap.1441-T1 Valid prediction for GlimmerHMM_glimmerT_31941-T1 Valid prediction for Augustus_model.g21284.t1 Couldn't classify 197319, 197424 Sorry, prediction pasa_asmbl_11596.p1 fails validation. (GCT) CG 197319-197424 GT CGG (GGT) AG 197666-197799 GT AGG (GTG) AG 197892-198057 GT AGG (TTT) AG 198141-198222 GT GGG (CCA) AG 198337-198433 GT CAG (GGT) AG 198526-198636 GT AGG (ATC) AG 198758-198869 GT AGG (ATC) AG 198963-199045 CC GAC -recovered pasa_asmbl_11596.p1, terminal, 198963, 199045 -recovered pasa_asmbl_11596.p1, internal, 197666, 197799 -recovered pasa_asmbl_11596.p1, internal, 197892, 198057 -recovered pasa_asmbl_11596.p1, internal, 198141, 198222 -recovered pasa_asmbl_11596.p1, internal, 198337, 198433 -recovered pasa_asmbl_11596.p1, internal, 198526, 198636 -recovered pasa_asmbl_11596.p1, internal, 198758, 198869 Valid prediction for GlimmerHMM_glimmerT_31933-T1 Valid prediction for GlimmerHMM_glimmerT_31969-T1 Valid prediction for GlimmerHMM_glimmerT_31950-T1 Valid prediction for pasa_asmbl_11094.p1 Valid prediction for GlimmerHMM_glimmerT_31961-T1 Couldn't classify 166940, 167082 Sorry, prediction CodingQuarry_transcript_13139-T1 fails validation. (ATG) CC 154630-154720 GT TGG (AAT) AG 155834-155963 GT ATG (GCG) AG 156190-156390 GT GGG (GGG) AG 156534-156693 GT AGG (GAC) AG 157002-157115 GT TAG (ACA) AG 157545-157565 GT TGG (TGT) AG 157717-157737 GT ATG (GCC) AG 157838-157882 GT AGG (GGA) AG 157982-158035 GT TTG (GGA) AG 158191-158235 GT AGG (GGT) AG 158343-158369 GT AGG (GGT) AG 158539-158565 GT AGG (GGC) AG 158736-158780 GT AGG (GGT) AG 158872-158925 GT ATG (GGC) AG 159675-159737 GT AGG (GGG) AG 159889-159951 GT AGG (GGG) AG 160047-160100 GT ATG (GGC) AG 160195-160230 GT GAG (GGT) AG 160327-160389 GT GCG (GGG) AG 160484-160546 GT CAG (GGT) AG 162241-162303 GT AGG (GGG) AG 162446-162508 GT GGG (GGA) AG 162654-162704 GT AGG (GGT) AG 162786-162821 GT CGG (GGT) AG 162993-163055 GT ATG (AAC) AG 164635-164700 GT CGG (GGA) AG 166492-166527 GT ATG (GAG) AG 166615-166651 GT CTG (TGT) TG 166940-167082 GT GGG (TTT) AG 167204-167313 GT CAG (GGC) AG 167537-167723 GT AGG (GTG) AG 168218-168389 GT AGG (ACA) AG 168499-168528 GT GAG (TTT) AG 168614-169236 TT AGT -recovered CodingQuarry_transcript_13139-T1, initial, 154630, 154720 -recovered CodingQuarry_transcript_13139-T1, terminal, 168614, 169236 -recovered CodingQuarry_transcript_13139-T1, internal, 155834, 155963 -recovered CodingQuarry_transcript_13139-T1, internal, 156190, 156390 -recovered CodingQuarry_transcript_13139-T1, internal, 156534, 156693 -recovered CodingQuarry_transcript_13139-T1, internal, 157002, 157115 -recovered CodingQuarry_transcript_13139-T1, internal, 157545, 157565 -recovered CodingQuarry_transcript_13139-T1, internal, 157717, 157737 -recovered CodingQuarry_transcript_13139-T1, internal, 157838, 157882 -recovered CodingQuarry_transcript_13139-T1, internal, 157982, 158035 -recovered CodingQuarry_transcript_13139-T1, internal, 158191, 158235 -recovered CodingQuarry_transcript_13139-T1, internal, 158343, 158369 -recovered CodingQuarry_transcript_13139-T1, internal, 158539, 158565 -recovered CodingQuarry_transcript_13139-T1, internal, 158736, 158780 -recovered CodingQuarry_transcript_13139-T1, internal, 158872, 158925 -recovered CodingQuarry_transcript_13139-T1, internal, 159675, 159737 -recovered CodingQuarry_transcript_13139-T1, internal, 159889, 159951 -recovered CodingQuarry_transcript_13139-T1, internal, 160047, 160100 -recovered CodingQuarry_transcript_13139-T1, internal, 160195, 160230 -recovered CodingQuarry_transcript_13139-T1, internal, 160327, 160389 -recovered CodingQuarry_transcript_13139-T1, internal, 160484, 160546 -recovered CodingQuarry_transcript_13139-T1, internal, 162241, 162303 -recovered CodingQuarry_transcript_13139-T1, internal, 162446, 162508 -recovered CodingQuarry_transcript_13139-T1, internal, 162654, 162704 -recovered CodingQuarry_transcript_13139-T1, internal, 162786, 162821 -recovered CodingQuarry_transcript_13139-T1, internal, 162993, 163055 -recovered CodingQuarry_transcript_13139-T1, internal, 164635, 164700 -recovered CodingQuarry_transcript_13139-T1, internal, 166492, 166527 -recovered CodingQuarry_transcript_13139-T1, internal, 166615, 166651 -recovered CodingQuarry_transcript_13139-T1, internal, 167204, 167313 -recovered CodingQuarry_transcript_13139-T1, internal, 167537, 167723 -recovered CodingQuarry_transcript_13139-T1, internal, 168218, 168389 -recovered CodingQuarry_transcript_13139-T1, internal, 168499, 168528 Valid prediction for Augustus_model.g21295.t1 Valid prediction for CodingQuarry_transcript_13143-T1 Valid prediction for snap_scaffold_13-snap.1429-T1 Valid prediction for snap_scaffold_13-snap.1452-T1 Valid prediction for snap_scaffold_13-snap.1456-T1 Valid prediction for GlimmerHMM_glimmerT_31937-T1 Valid prediction for Augustus_model.g21301.t1 Valid prediction for HiQ_model.g21304.t1 Valid prediction for GlimmerHMM_glimmerT_31946-T1 Valid prediction for Augustus_model.g21278.t1 Valid prediction for GlimmerHMM_glimmerT_31930-T1 Valid prediction for snap_scaffold_13-snap.1457-T1 Valid prediction for Augustus_model.g21310.t1 Valid prediction for Augustus_model.g21290.t1 Valid prediction for GlimmerHMM_glimmerT_31957-T1 Valid prediction for Augustus_model.g21294.t1 Valid prediction for HiQ_model.g21293.t1 Couldn't classify 145890, 146696 Sorry, prediction pasa_asmbl_11095.p1 fails validation. (TTT) GT 145890-146696 GG AGG Valid prediction for snap_scaffold_13-snap.1443-T1 Valid prediction for snap_scaffold_13-snap.1464-T1 Couldn't classify 190695, 190778 Sorry, prediction pasa_asmbl_11101.p1 fails validation. (ATG) GG 189085-189154 GT CGG (GGG) AG 189247-189396 GT AGG (ATG) AG 189514-189600 GT AGG (CAT) AG 189692-189781 GT CAG (AAC) AG 189883-189914 GT AGG (GGT) AG 190070-190127 GT AGG (CCC) AG 190214-190416 GT AGG (CCC) AG 190493-190591 GT GGG (GAG) AG 190695-190778 TT ACT -recovered pasa_asmbl_11101.p1, initial, 189085, 189154 add_exon() Sorry, pasa_asmbl_11101.p1 189514-189600-initial-1 is invalid. -recovered pasa_asmbl_11101.p1, initial, 189514, 189600 -recovered pasa_asmbl_11101.p1, internal, 189247, 189396 -recovered pasa_asmbl_11101.p1, internal, 189514, 189600 -recovered pasa_asmbl_11101.p1, internal, 189692, 189781 -recovered pasa_asmbl_11101.p1, internal, 189883, 189914 -recovered pasa_asmbl_11101.p1, internal, 190070, 190127 -recovered pasa_asmbl_11101.p1, internal, 190214, 190416 -recovered pasa_asmbl_11101.p1, internal, 190493, 190591 Valid prediction for HiQ_model.g21292.t1 Valid prediction for snap_scaffold_13-snap.1434-T1 Valid prediction for snap_scaffold_13-snap.1421-T1 Valid prediction for pasa_asmbl_11099.p1 Valid prediction for snap_scaffold_13-snap.1470-T1 Couldn't classify 36824, 36982 Sorry, prediction pasa_asmbl_11084.p1 fails validation. (GTT) CA 36824-36982 GT AGG (TGT) AG 37305-37337 GT GTG (CCC) AG 38653-38754 GT AGG (CCC) AG 39330-39386 GT AGG (GTG) AG 39892-39984 GT AGG (TAT) AG 40497-40682 GT CTG (GTC) AG 40811-40936 CA AGC -recovered pasa_asmbl_11084.p1, terminal, 40811, 40936 -recovered pasa_asmbl_11084.p1, internal, 37305, 37337 -recovered pasa_asmbl_11084.p1, internal, 38653, 38754 -recovered pasa_asmbl_11084.p1, internal, 39330, 39386 -recovered pasa_asmbl_11084.p1, internal, 39892, 39984 -recovered pasa_asmbl_11084.p1, internal, 40497, 40682 Valid prediction for GlimmerHMM_glimmerT_31958-T1 Valid prediction for GlimmerHMM_glimmerT_31951-T1 Valid prediction for pasa_asmbl_11086.p1 Couldn't classify 238552, 238648 Sorry, prediction pasa_asmbl_11695.p1 fails validation. (ATG) CT 237664-237727 GT AGG (GGA) AG 237813-238069 GT CAG (CCC) AG 238213-238406 GT ATG (TGT) AG 238552-238648 GT CGG -recovered pasa_asmbl_11695.p1, initial, 237664, 237727 -recovered pasa_asmbl_11695.p1, internal, 237813, 238069 -recovered pasa_asmbl_11695.p1, internal, 238213, 238406 -recovered pasa_asmbl_11695.p1, internal, 238552, 238648 Valid prediction for Augustus_model.g21299.t1 Valid prediction for CodingQuarry_transcript_13146-T1 Valid prediction for GlimmerHMM_glimmerT_31940-T1 Valid prediction for Augustus_model.g21303.t1 Valid prediction for snap_scaffold_13-snap.1469-T1 Valid prediction for snap_scaffold_13-snap.1436-T1 Valid prediction for CodingQuarry_transcript_13141-T1 Valid prediction for CodingQuarry_transcript_13147-T1 Valid prediction for snap_scaffold_13-snap.1460-T1 Valid prediction for snap_scaffold_13-snap.1446-T1 Valid prediction for GlimmerHMM_glimmerT_31949-T1 Valid prediction for snap_scaffold_13-snap.1459-T1 Valid prediction for Augustus_model.g21291.t1 Valid prediction for snap_scaffold_13-snap.1438-T1 Valid prediction for CodingQuarry_transcript_13132-T1 Couldn't classify 220668, 220719 Sorry, prediction pasa_asmbl_11110.p1 fails validation. (ACA) AC 220668-220719 GT AGG (GAT) AG 221079-221379 GT TGG (GAT) AG 221520-221685 TG GAT -recovered pasa_asmbl_11110.p1, terminal, 221520, 221685 -recovered pasa_asmbl_11110.p1, internal, 221079, 221379 Valid prediction for GlimmerHMM_glimmerT_31959-T1 Valid prediction for GlimmerHMM_glimmerT_31954-T1 Valid prediction for Augustus_model.g21302.t1 Valid prediction for snap_scaffold_13-snap.1466-T1 Valid prediction for GlimmerHMM_glimmerT_31955-T1 Valid prediction for GlimmerHMM_glimmerT_31953-T1 Valid prediction for GlimmerHMM_glimmerT_31968-T1 Valid prediction for Augustus_model.g21281.t1 Valid prediction for CodingQuarry_transcript_13135-T1 Valid prediction for CodingQuarry_transcript_13145-T1 Valid prediction for HiQ_model.g21298.t1 Valid prediction for snap_scaffold_13-snap.1471-T1 Valid prediction for snap_scaffold_13-snap.1442-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for pasa_asmbl_11088.p1 Valid prediction for CodingQuarry_transcript_13140-T1 Valid prediction for snap_scaffold_13-snap.1420-T1 Valid prediction for snap_scaffold_13-snap.1439-T1 Valid prediction for CodingQuarry_transcript_13136-T1 Valid prediction for HiQ_model.g21297.t1 Valid prediction for CodingQuarry_transcript_13142-T1 Valid prediction for GlimmerHMM_glimmerT_31945-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_31936-T1 Valid prediction for HiQ_model.g21279.t1 Valid prediction for snap_scaffold_13-snap.1458-T1 Valid prediction for Augustus_model.g21285.t1 Valid prediction for snap_scaffold_13-snap.1462-T1 Valid prediction for snap_scaffold_13-snap.1425-T1 Couldn't classify 168121, 168174 Sorry, prediction pasa_asmbl_9933.p1 fails validation. (TGT) CA 168121-168174 GT AGG (GTT) AG 169006-169146 GT AGG (GAT) AG 169276-169351 GT TTG (TGA) AG 169458-169540 GT AGG (GAT) AG 169718-169847 GT CAG (CCT) AG 170015-170103 GT AGG (GTT) AG 170182-170283 GT AGG (TGT) AG 170376-170600 GT AGG (ATG) AG 170724-170798 GT GGG (TCT) AG 171090-171192 GT AGG (GAG) AG 171297-171394 GT AGG (GCT) AG 171514-171621 GT GGG (ATG) AG 171737-171833 GT GTG (TAA) AG 171940-172035 GT TGG (TGA) AG 172263-172368 GT CGG (GCT) AG 172586-172673 GT ATG (AAA) AG 172861-172937 GT AAG (GGA) AG 173108-173300 GT AGG (ATC) AG 173415-173510 GA GAG -recovered pasa_asmbl_9933.p1, initial, 170724, 170798 -recovered pasa_asmbl_9933.p1, initial, 171737, 171833 -recovered pasa_asmbl_9933.p1, terminal, 173415, 173510 -recovered pasa_asmbl_9933.p1, internal, 169006, 169146 -recovered pasa_asmbl_9933.p1, internal, 169276, 169351 -recovered pasa_asmbl_9933.p1, internal, 169458, 169540 -recovered pasa_asmbl_9933.p1, internal, 169718, 169847 -recovered pasa_asmbl_9933.p1, internal, 170015, 170103 -recovered pasa_asmbl_9933.p1, internal, 170182, 170283 -recovered pasa_asmbl_9933.p1, internal, 170376, 170600 -recovered pasa_asmbl_9933.p1, internal, 170724, 170798 -recovered pasa_asmbl_9933.p1, internal, 171090, 171192 -recovered pasa_asmbl_9933.p1, internal, 171297, 171394 -recovered pasa_asmbl_9933.p1, internal, 171514, 171621 -recovered pasa_asmbl_9933.p1, internal, 171737, 171833 -recovered pasa_asmbl_9933.p1, internal, 171940, 172035 -recovered pasa_asmbl_9933.p1, internal, 172263, 172368 -recovered pasa_asmbl_9933.p1, internal, 172586, 172673 -recovered pasa_asmbl_9933.p1, internal, 172861, 172937 -recovered pasa_asmbl_9933.p1, internal, 173108, 173300 Valid prediction for GlimmerHMM_glimmerT_31935-T1 Valid prediction for GlimmerHMM_glimmerT_31934-T1 Valid prediction for GlimmerHMM_glimmerT_31952-T1 Valid prediction for GlimmerHMM_glimmerT_31965-T1 Valid prediction for CodingQuarry_transcript_13137-T1 Valid prediction for HiQ_model.g21288.t1 Valid prediction for CodingQuarry_transcript_13129-T1 Valid prediction for snap_scaffold_13-snap.1468-T1 Valid prediction for snap_scaffold_13-snap.1455-T1 Valid prediction for snap_scaffold_13-snap.1423-T1 Valid prediction for pasa_asmbl_9913.p1 Valid prediction for GlimmerHMM_glimmerT_31963-T1 Valid prediction for snap_scaffold_13-snap.1432-T1 Valid prediction for snap_scaffold_13-snap.1445-T1 Valid prediction for HiQ_model.g21280.t1 Valid prediction for CodingQuarry_transcript_13148-T1 Valid prediction for HiQ_model.g21305.t1 Valid prediction for CodingQuarry_transcript_13131-T1 Valid prediction for Augustus_model.g21309.t1 Valid prediction for GlimmerHMM_glimmerT_31942-T1 Valid prediction for snap_scaffold_13-snap.1426-T1 Valid prediction for snap_scaffold_13-snap.1430-T1 Couldn't classify 230376, 230488 Couldn't classify 230891, 230965 Sorry, prediction pasa_asmbl_9923.p1 fails validation. (AAG) GT 230376-230488 GT CAG (TTG) AG 230625-230754 GT AGG (AAA) AG 230891-230965 GA GGG -recovered pasa_asmbl_9923.p1, internal, 230625, 230754 Valid prediction for GlimmerHMM_glimmerT_31966-T1 Couldn't classify 50039, 50111 Sorry, prediction CodingQuarry_transcript_13152-T1 fails validation. (ATG) AG 49486-49591 GT AGG (GGA) AG 49717-49759 GT GTG (CAA) TA 50039-50111 GT CGG (ATT) AG 50209-50320 GT GAG (GTG) AG 50508-50635 GT TGG (GTG) AG 50800-51173 GT AGG (CAG) AG 51282-51411 AC GAA -recovered CodingQuarry_transcript_13152-T1, initial, 49486, 49591 -recovered CodingQuarry_transcript_13152-T1, terminal, 51282, 51411 -recovered CodingQuarry_transcript_13152-T1, internal, 49486, 49591 -recovered CodingQuarry_transcript_13152-T1, internal, 49717, 49759 -recovered CodingQuarry_transcript_13152-T1, internal, 50209, 50320 -recovered CodingQuarry_transcript_13152-T1, internal, 50508, 50635 -recovered CodingQuarry_transcript_13152-T1, internal, 50800, 51173 Couldn't classify 50508, 50605 Sorry, prediction pasa_asmbl_10381.p1 fails validation. (ATG) CG 48692-48799 GT ACG (GTG) AG 48907-49097 GT AGG (GAC) AG 49215-49320 GT CTG (ACG) AG 49462-49591 GT AGG (GGA) AG 49717-49757 GT AGG (CCT) AG 49861-49867 GT CCG (GTG) AG 50044-50111 GT CGG (ATT) AG 50209-50320 GT GAG (GTG) AG 50508-50605 AA GCA -recovered pasa_asmbl_10381.p1, initial, 48692, 48799 -recovered pasa_asmbl_10381.p1, internal, 48907, 49097 -recovered pasa_asmbl_10381.p1, internal, 49215, 49320 -recovered pasa_asmbl_10381.p1, internal, 49462, 49591 -recovered pasa_asmbl_10381.p1, internal, 49717, 49757 -recovered pasa_asmbl_10381.p1, internal, 49861, 49867 -recovered pasa_asmbl_10381.p1, internal, 50044, 50111 -recovered pasa_asmbl_10381.p1, internal, 50209, 50320 Valid prediction for HiQ_model.g21300.t1 Valid prediction for GlimmerHMM_glimmerT_31947-T1 Valid prediction for pasa_asmbl_11087.p1 Valid prediction for GlimmerHMM_glimmerT_31964-T1 Valid prediction for GlimmerHMM_glimmerT_31932-T1 Valid prediction for CodingQuarry_transcript_13128-T1 Valid prediction for Augustus_model.g21308.t1 Valid prediction for GlimmerHMM_glimmerT_31956-T1 Valid prediction for snap_scaffold_13-snap.1463-T1 Valid prediction for pasa_asmbl_9926.p2 Valid prediction for snap_scaffold_13-snap.1448-T1 Valid prediction for pasa_asmbl_9943.p1 Valid prediction for CodingQuarry_transcript_13150-T1 Valid prediction for CodingQuarry_transcript_13144-T1 Valid prediction for CodingQuarry_transcript_13133-T1 Couldn't classify 231654, 231707 Couldn't classify 232878, 232918 Sorry, prediction pasa_asmbl_9922.p1 fails validation. (TCC) CA 231654-231707 GT AGG (ACC) AG 231871-232023 GT AGG (GAA) AG 232202-232360 GT AGG (AAG) AG 232528-232687 GT AGG (CGA) AG 232878-232918 AT GGA -recovered pasa_asmbl_9922.p1, internal, 231871, 232023 -recovered pasa_asmbl_9922.p1, internal, 232202, 232360 -recovered pasa_asmbl_9922.p1, internal, 232528, 232687 Valid prediction for snap_scaffold_13-snap.1435-T1 Valid prediction for snap_scaffold_13-snap.1467-T1 Couldn't classify 50609, 50635 Sorry, prediction pasa_asmbl_10319.p1 fails validation. (CAG) AA 50609-50635 GT TGG (GTG) AG 50800-51173 GT AGG (CAG) AG 51282-51411 AC GAA -recovered pasa_asmbl_10319.p1, terminal, 51282, 51411 -recovered pasa_asmbl_10319.p1, internal, 50800, 51173 Valid prediction for Augustus_model.g21296.t1 Valid prediction for pasa_asmbl_9939.p1 Valid prediction for snap_scaffold_13-snap.1422-T1 Valid prediction for GlimmerHMM_glimmerT_31931-T1 Valid prediction for snap_scaffold_13-snap.1431-T1 Valid prediction for snap_scaffold_13-snap.1465-T1 Valid prediction for pasa_asmbl_9936.p1 Valid prediction for pasa_asmbl_9938.p1 Valid prediction for GlimmerHMM_glimmerT_31938-T1 Valid prediction for pasa_asmbl_9920.p1 Valid prediction for Augustus_model.g21306.t1 Valid prediction for GlimmerHMM_glimmerT_31962-T1 Couldn't classify 49717, 49760 Couldn't classify 50040, 50111 Sorry, prediction CodingQuarry_transcript_13151-T1 fails validation. (ATG) AG 49486-49591 GT AGG (GGA) AG 49717-49760 TG TGT (AAA) AC 50040-50111 GT CGG (ATT) AG 50209-50320 GT GAG (GTG) AG 50508-50635 GT TGG (GTG) AG 50800-51173 GT AGG (CAG) AG 51282-51411 AC GAA -recovered CodingQuarry_transcript_13151-T1, initial, 49486, 49591 -recovered CodingQuarry_transcript_13151-T1, terminal, 51282, 51411 -recovered CodingQuarry_transcript_13151-T1, internal, 49486, 49591 -recovered CodingQuarry_transcript_13151-T1, internal, 50209, 50320 -recovered CodingQuarry_transcript_13151-T1, internal, 50508, 50635 -recovered CodingQuarry_transcript_13151-T1, internal, 50800, 51173 Valid prediction for snap_scaffold_13-snap.1451-T1 Valid prediction for GlimmerHMM_glimmerT_31967-T1 Valid prediction for GlimmerHMM_glimmerT_31943-T1 Couldn't classify 26529, 26678 Couldn't classify 28370, 28593 Sorry, prediction pasa_asmbl_9944.p1 fails validation. (ACC) TG 26529-26678 GT AGG (CTC) AG 26791-26973 GT CTG (CAA) AG 27109-27280 GT TGG (ATT) AG 27370-27477 GT TGG (GAT) AG 27587-27796 GT AGG (GTG) AG 27879-27998 GT GGG (TTT) AG 28095-28229 GT AGG (AGG) AG 28370-28593 GA GGG -recovered pasa_asmbl_9944.p1, internal, 26791, 26973 -recovered pasa_asmbl_9944.p1, internal, 27109, 27280 -recovered pasa_asmbl_9944.p1, internal, 27370, 27477 -recovered pasa_asmbl_9944.p1, internal, 27587, 27796 -recovered pasa_asmbl_9944.p1, internal, 27879, 27998 -recovered pasa_asmbl_9944.p1, internal, 28095, 28229 Valid prediction for Augustus_model.g21282.t1 Valid prediction for GlimmerHMM_glimmerT_31939-T1 Valid prediction for Augustus_model.g21286.t1 Valid prediction for snap_scaffold_13-snap.1461-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 162497, rend_intergenic: 162224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174036, rend_intergenic: 162497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184279, rend_intergenic: 176030 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252775, rend_intergenic: 248358 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265992, rend_intergenic: 259745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 279034 -exon list size: 683 building trellis 0.1 0.3 0.4 0.6 0.7 0.9 1.0 1.2 1.3 1.5 1.6 1.8 1.9 2.0 2.2 2.3 2.5 2.6 2.8 2.9 3.1 3.2 3.4 3.5 3.6 3.8 3.9 4.1 4.2 4.4 4.5 4.7 4.8 5.0 5.1 5.3 5.4 5.5 5.7 5.8 6.0 6.1 6.3 6.4 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.9 8.0 8.2 8.3 8.5 8.6 8.8 8.9 9.1 9.2 9.3 9.5 9.6 9.8 9.9 10.1 10.2 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.4 11.5 11.7 11.8 12.0 12.1 12.3 12.4 12.6 12.7 12.8 13.0 13.1 13.3 13.4 13.6 13.7 13.9 14.0 14.2 14.3 14.5 14.6 14.7 14.9 15.0 15.2 15.3 15.5 15.6 15.8 15.9 16.1 16.2 16.4 16.5 16.6 16.8 16.9 17.1 17.2 17.4 17.5 17.7 17.8 18.0 18.1 18.2 18.4 18.5 18.7 18.8 19.0 19.1 19.3 19.4 19.6 19.7 19.9 20.0 20.1 20.3 20.4 20.6 20.7 20.9 21.0 21.2 21.3 21.5 21.6 21.8 21.9 22.0 22.2 22.3 22.5 22.6 22.8 22.9 23.1 23.2 23.4 23.5 23.6 23.8 23.9 24.1 24.2 24.4 24.5 24.7 24.8 25.0 25.1 25.3 25.4 25.5 25.7 25.8 26.0 26.1 26.3 26.4 26.6 26.7 26.9 27.0 27.2 27.3 27.4 27.6 27.7 27.9 28.0 28.2 28.3 28.5 28.6 28.8 28.9 29.1 29.2 29.3 29.5 29.6 29.8 29.9 30.1 30.2 30.4 30.5 30.7 30.8 30.9 31.1 31.2 31.4 31.5 31.7 31.8 32.0 32.1 32.3 32.4 32.6 32.7 32.8 33.0 33.1 33.3 33.4 33.6 33.7 33.9 34.0 34.2 34.3 34.5 34.6 34.7 34.9 35.0 35.2 35.3 35.5 35.6 35.8 35.9 36.1 36.2 36.4 36.5 36.6 36.8 36.9 37.1 37.2 37.4 37.5 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.7 38.8 39.0 39.1 39.3 39.4 39.6 39.7 39.9 40.0 40.1 40.3 40.4 40.6 40.7 40.9 41.0 41.2 41.3 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.1 43.2 43.4 43.5 43.6 43.8 43.9 44.1 44.2 44.4 44.5 44.7 44.8 45.0 45.1 45.3 45.4 45.5 45.7 45.8 46.0 46.1 46.3 46.4 46.6 46.7 46.9 47.0 47.2 47.3 47.4 47.6 47.7 47.9 48.0 48.2 48.3 48.5 48.6 48.8 48.9 49.1 49.2 49.3 49.5 49.6 49.8 49.9 50.1 50.2 50.4 50.5 50.7 50.8 50.9 51.1 51.2 51.4 51.5 51.7 51.8 52.0 52.1 52.3 52.4 52.6 52.7 52.8 53.0 53.1 53.3 53.4 53.6 53.7 53.9 54.0 54.2 54.3 54.5 54.6 54.7 54.9 55.0 55.2 55.3 55.5 55.6 55.8 55.9 56.1 56.2 56.4 56.5 56.6 56.8 56.9 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.7 58.8 59.0 59.1 59.3 59.4 59.6 59.7 59.9 60.0 60.1 60.3 60.4 60.6 60.7 60.9 61.0 61.2 61.3 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.5 62.6 62.8 62.9 63.1 63.2 63.4 63.5 63.6 63.8 63.9 64.1 64.2 64.4 64.5 64.7 64.8 65.0 65.1 65.3 65.4 65.5 65.7 65.8 66.0 66.1 66.3 66.4 66.6 66.7 66.9 67.0 67.2 67.3 67.4 67.6 67.7 67.9 68.0 68.2 68.3 68.5 68.6 68.8 68.9 69.1 69.2 69.3 69.5 69.6 69.8 69.9 70.1 70.2 70.4 70.5 70.7 70.8 70.9 71.1 71.2 71.4 71.5 71.7 71.8 72.0 72.1 72.3 72.4 72.6 72.7 72.8 73.0 73.1 73.3 73.4 73.6 73.7 73.9 74.0 74.2 74.3 74.5 74.6 74.7 74.9 75.0 75.2 75.3 75.5 75.6 75.8 75.9 76.1 76.2 76.4 76.5 76.6 76.8 76.9 77.1 77.2 77.4 77.5 77.7 77.8 78.0 78.1 78.2 78.4 78.5 78.7 78.8 79.0 79.1 79.3 79.4 79.6 79.7 79.9 80.0 80.1 80.3 80.4 80.6 80.7 80.9 81.0 81.2 81.3 81.5 81.6 81.8 81.9 82.0 82.2 82.3 82.5 82.6 82.8 82.9 83.1 83.2 83.4 83.5 83.6 83.8 83.9 84.1 84.2 84.4 84.5 84.7 84.8 85.0 85.1 85.3 85.4 85.5 85.7 85.8 86.0 86.1 86.3 86.4 86.6 86.7 86.9 87.0 87.2 87.3 87.4 87.6 87.7 87.9 88.0 88.2 88.3 88.5 88.6 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.8 89.9 90.1 90.2 90.4 90.5 90.7 90.8 90.9 91.1 91.2 91.4 91.5 91.7 91.8 92.0 92.1 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.6 93.7 93.9 94.0 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.2 95.3 95.5 95.6 95.8 95.9 96.1 96.2 96.4 96.5 96.6 96.8 96.9 97.1 97.2 97.4 97.5 97.7 97.8 98.0 98.1 98.2 98.4 98.5 98.7 98.8 99.0 99.1 99.3 99.4 99.6 99.7 99.9 -found 40 predictions from path traversal Error with prediction: snap lend_intergenic: 162497, rend_intergenic: 162224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174036, rend_intergenic: 162497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184279, rend_intergenic: 176030 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252775, rend_intergenic: 248358 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265992, rend_intergenic: 259745 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 40 predictions persist after filtering for low support