-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_6821958-7261606 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 113082, 113088 Couldn't classify 115754, 115828 Sorry, prediction pasa_asmbl_10996.p1 fails validation. (TTG) TG 113082-113088 GT TGG (ATA) AG 113296-113323 GT ACG (TGG) AG 113805-113916 GC AGG (GGC) AG 114380-114472 GT TTG (GGT) AG 114641-114704 GT CTG (ATC) AG 114811-114909 GT TGG (AAA) AG 115053-115156 GT ATG (GAT) AG 115233-115371 GT TGG (TGG) AG 115500-115618 GT AGG (GTG) AG 115754-115828 CA ACC -recovered pasa_asmbl_10996.p1, internal, 113296, 113323 -recovered pasa_asmbl_10996.p1, internal, 113805, 113916 -recovered pasa_asmbl_10996.p1, internal, 114380, 114472 -recovered pasa_asmbl_10996.p1, internal, 114641, 114704 -recovered pasa_asmbl_10996.p1, internal, 114811, 114909 -recovered pasa_asmbl_10996.p1, internal, 115053, 115156 -recovered pasa_asmbl_10996.p1, internal, 115233, 115371 -recovered pasa_asmbl_10996.p1, internal, 115500, 115618 Valid prediction for CodingQuarry_transcript_13094-T1 Couldn't classify 116105, 116248 Couldn't classify 123089, 123277 Sorry, prediction pasa_asmbl_11651.p1 fails validation. (AAC) TC 116105-116248 GT AGG (CCA) AG 116476-116779 GT GGG (ATA) AG 116891-116955 GT GAG (GAA) AG 117044-117131 GT AGG (GTC) AG 117261-117378 GT AGG (ATA) AG 117476-117599 GT AGG (GTG) AG 117762-117898 GT AGG (AGA) AG 118161-118416 GT CTG (GAA) AG 118541-118783 GT AGG (GTA) AG 118874-119050 GT ATG (CTT) AG 119207-119352 GT AAG (GAA) AG 119581-119671 GT AGG (GCT) AG 119924-120313 GT AGG (GGC) AG 120676-120802 GT TGG (GTG) AG 120984-121102 GT AGG (GCT) AG 121311-121507 GT AAG (GAA) AG 121654-121837 GT AGG (GTT) AG 121959-122124 GT ACG (AGG) AG 122223-122347 GT AGG (GGA) AG 122435-122743 GT AGG (GAT) AG 123089-123277 TT GAT -recovered pasa_asmbl_11651.p1, internal, 116476, 116779 -recovered pasa_asmbl_11651.p1, internal, 116891, 116955 -recovered pasa_asmbl_11651.p1, internal, 117044, 117131 -recovered pasa_asmbl_11651.p1, internal, 117261, 117378 -recovered pasa_asmbl_11651.p1, internal, 117476, 117599 -recovered pasa_asmbl_11651.p1, internal, 117762, 117898 -recovered pasa_asmbl_11651.p1, internal, 118161, 118416 -recovered pasa_asmbl_11651.p1, internal, 118541, 118783 -recovered pasa_asmbl_11651.p1, internal, 118874, 119050 -recovered pasa_asmbl_11651.p1, internal, 119207, 119352 -recovered pasa_asmbl_11651.p1, internal, 119581, 119671 -recovered pasa_asmbl_11651.p1, internal, 119924, 120313 -recovered pasa_asmbl_11651.p1, internal, 120676, 120802 -recovered pasa_asmbl_11651.p1, internal, 120984, 121102 -recovered pasa_asmbl_11651.p1, internal, 121311, 121507 -recovered pasa_asmbl_11651.p1, internal, 121654, 121837 -recovered pasa_asmbl_11651.p1, internal, 121959, 122124 -recovered pasa_asmbl_11651.p1, internal, 122223, 122347 -recovered pasa_asmbl_11651.p1, internal, 122435, 122743 Valid prediction for GlimmerHMM_glimmerT_31820-T1 Valid prediction for CodingQuarry_transcript_13101-T1 Valid prediction for GlimmerHMM_glimmerT_31856-T1 Valid prediction for snap_scaffold_13-snap.1319-T1 Valid prediction for snap_scaffold_13-snap.1265-T1 Valid prediction for HiQ_model.g21192.t1 Valid prediction for HiQ_model.g21211.t1 Valid prediction for snap_scaffold_13-snap.1274-T1 Valid prediction for snap_scaffold_13-snap.1258-T1 Valid prediction for CodingQuarry_transcript_13093-T1 Valid prediction for snap_scaffold_13-snap.1259-T1 Valid prediction for pasa_asmbl_11019.p1 Valid prediction for snap_scaffold_13-snap.1277-T1 Valid prediction for snap_scaffold_13-snap.1312-T1 Couldn't classify 55122, 55219 Couldn't classify 61306, 61322 Sorry, prediction pasa_asmbl_10991.p1 fails validation. (GAA) TG 55122-55219 GT CGG (GCA) AG 56691-56722 GT AGG (ATT) AG 56899-57016 GT CTG (TTG) AG 57293-57425 GT AGG (CTA) AG 57689-57860 GT TGG (CCC) AG 57950-58021 GT TGG (GTC) AG 58145-58295 GT AGG (CCG) AG 58556-58691 GT AGG (AAG) AG 58976-59138 GT CAG (TGT) AG 59321-59477 GT TAG (TGT) AG 59669-59739 GT AGG (TGA) AG 59984-60044 GT CGG (GAC) AG 60152-60271 GT GGG (ACT) AG 60417-60834 GT AGG (GTT) AG 61044-61185 GT AGG (GAT) AG 61306-61322 TA CCT -recovered pasa_asmbl_10991.p1, internal, 56691, 56722 -recovered pasa_asmbl_10991.p1, internal, 56899, 57016 -recovered pasa_asmbl_10991.p1, internal, 57293, 57425 -recovered pasa_asmbl_10991.p1, internal, 57689, 57860 -recovered pasa_asmbl_10991.p1, internal, 57950, 58021 -recovered pasa_asmbl_10991.p1, internal, 58145, 58295 -recovered pasa_asmbl_10991.p1, internal, 58556, 58691 -recovered pasa_asmbl_10991.p1, internal, 58976, 59138 -recovered pasa_asmbl_10991.p1, internal, 59321, 59477 -recovered pasa_asmbl_10991.p1, internal, 59669, 59739 -recovered pasa_asmbl_10991.p1, internal, 59984, 60044 -recovered pasa_asmbl_10991.p1, internal, 60152, 60271 -recovered pasa_asmbl_10991.p1, internal, 60417, 60834 -recovered pasa_asmbl_10991.p1, internal, 61044, 61185 Valid prediction for pasa_asmbl_11028.p1 Valid prediction for snap_scaffold_13-snap.1273-T1 Valid prediction for GlimmerHMM_glimmerT_31830-T1 Valid prediction for HiQ_model.g21185.t1 Valid prediction for snap_scaffold_13-snap.1271-T1 Valid prediction for GlimmerHMM_glimmerT_31823-T1 Valid prediction for snap_scaffold_13-snap.1268-T1 Valid prediction for snap_scaffold_13-snap.1318-T1 Valid prediction for GlimmerHMM_glimmerT_31826-T1 Valid prediction for snap_scaffold_13-snap.1310-T1 Valid prediction for HiQ_model.g21212.t1 Valid prediction for Augustus_model.g21194.t1 Valid prediction for GlimmerHMM_glimmerT_31855-T1 Valid prediction for HiQ_model.g21182.t1 Valid prediction for GlimmerHMM_glimmerT_31827-T1 Valid prediction for Augustus_model.g21210.t1 Valid prediction for snap_scaffold_13-snap.1313-T1 Valid prediction for snap_scaffold_13-snap.1264-T1 Valid prediction for HiQ_model.g21189.t1 Valid prediction for GlimmerHMM_glimmerT_31854-T1 Couldn't classify 163031, 163111 Couldn't classify 163765, 163896 Sorry, prediction pasa_asmbl_11634.p1 fails validation. (GAC) AG 163031-163111 GT GGG (GTG) AG 163335-163439 GT AGG (ACT) AG 163532-163627 GT CGG (GAG) AG 163765-163896 GT AGG -recovered pasa_asmbl_11634.p1, internal, 163031, 163111 -recovered pasa_asmbl_11634.p1, internal, 163335, 163439 -recovered pasa_asmbl_11634.p1, internal, 163532, 163627 -recovered pasa_asmbl_11634.p1, internal, 163765, 163896 Valid prediction for snap_scaffold_13-snap.1275-T1 Valid prediction for CodingQuarry_transcript_13090-T1 Valid prediction for snap_scaffold_13-snap.1263-T1 Valid prediction for CodingQuarry_transcript_13091-T1 Valid prediction for snap_scaffold_13-snap.1256-T1 Valid prediction for snap_scaffold_13-snap.1269-T1 Valid prediction for HiQ_model.g21183.t1 Valid prediction for GlimmerHMM_glimmerT_31860-T1 Couldn't classify 123695, 123847 Sorry, prediction pasa_asmbl_10997.p1 fails validation. (GAG) AA 123695-123847 GT GGG (GTG) AG 123967-124071 GT AGG (ACT) AG 124157-124252 GT CGG (GAG) AG 124349-124480 GT AGG (GCA) AG 124924-124941 AA AGA -recovered pasa_asmbl_10997.p1, terminal, 124924, 124941 -recovered pasa_asmbl_10997.p1, internal, 123967, 124071 -recovered pasa_asmbl_10997.p1, internal, 124157, 124252 -recovered pasa_asmbl_10997.p1, internal, 124349, 124480 Valid prediction for snap_scaffold_13-snap.1261-T1 Couldn't classify 432688, 432785 Sorry, prediction pasa_asmbl_11031.p1 fails validation. (ATG) CG 430782-431735 GT AGG (GTG) AG 432350-432449 GT CGG (CTC) AG 432688-432785 CA CCC -recovered pasa_asmbl_11031.p1, initial, 430782, 431735 -recovered pasa_asmbl_11031.p1, internal, 432350, 432449 Valid prediction for Augustus_model.g21193.t1 Valid prediction for snap_scaffold_13-snap.1257-T1 Valid prediction for CodingQuarry_transcript_13092-T1 Valid prediction for snap_scaffold_13-snap.1286-T1 Valid prediction for snap_scaffold_13-snap.1276-T1 Valid prediction for HiQ_model.g21187.t1 Couldn't classify 168434, 168446 Couldn't classify 169686, 169784 Sorry, prediction pasa_asmbl_11004.p1 fails validation. (TTC) GC 168434-168446 GT TGG (TGT) AG 168705-168742 GT TGG (ACC) AG 168878-169093 GT AGG (GTC) AG 169371-169514 GT ACG (ACC) AG 169686-169784 GA TGG -recovered pasa_asmbl_11004.p1, internal, 168705, 168742 -recovered pasa_asmbl_11004.p1, internal, 168878, 169093 -recovered pasa_asmbl_11004.p1, internal, 169371, 169514 Valid prediction for GlimmerHMM_glimmerT_31828-T1 Valid prediction for Augustus_model.g21188.t1 Valid prediction for snap_scaffold_13-snap.1272-T1 Valid prediction for Augustus_model.g21213.t1 Valid prediction for CodingQuarry_transcript_13102-T1 Valid prediction for Augustus_model.g21215.t1 Couldn't classify 61404, 61697 Sorry, prediction pasa_asmbl_10992.p1 fails validation. (CTC) AC 61404-61697 GT AGG (TAC) AG 61870-62262 GT AGG (TTG) AG 63704-63790 GT AGG (GAG) AG 64022-64178 GT AGG (ACC) AG 64479-64649 GT CGG (GAA) AG 64944-65101 GT AGG (TCC) AG 65345-65458 AG GAA -recovered pasa_asmbl_10992.p1, terminal, 65345, 65458 -recovered pasa_asmbl_10992.p1, internal, 61870, 62262 -recovered pasa_asmbl_10992.p1, internal, 63704, 63790 -recovered pasa_asmbl_10992.p1, internal, 64022, 64178 -recovered pasa_asmbl_10992.p1, internal, 64479, 64649 -recovered pasa_asmbl_10992.p1, internal, 64944, 65101 Couldn't classify 25587, 25620 Sorry, prediction pasa_asmbl_10986.p1 fails validation. (AAC) GC 25587-25620 GT AGG (GAA) AG 26027-26215 GT AGG (GTA) AG 26422-26667 GT ACG (CCT) AG 26792-26945 GT CGG (GTG) AG 27250-27392 GT ACG (CTT) AG 27492-27670 GT AGG (GTG) AG 27840-27996 GT AGG (ATG) AG 28190-28395 GT TGG (GAC) AG 28601-28680 GT AAG (GCA) AG 28884-29021 GT AAG (GTA) AG 29269-29413 GT AGG (GAT) AG 29633-29782 GT AGG (ACC) AG 30320-30434 GT AGG (ACT) AG 30724-30923 GC AGG (GAT) AG 31128-31286 GT TGG (GCC) AG 31520-31619 GT CGG (GCA) AG 31984-32240 CC AAC add_exon() Sorry, pasa_asmbl_10986.p1 28190-28395-initial-1 is invalid. -recovered pasa_asmbl_10986.p1, initial, 28190, 28395 add_exon() Sorry, pasa_asmbl_10986.p1 28601-28680-terminal-2 is invalid. -recovered pasa_asmbl_10986.p1, terminal, 28601, 28680 -recovered pasa_asmbl_10986.p1, terminal, 31984, 32240 -recovered pasa_asmbl_10986.p1, internal, 26027, 26215 -recovered pasa_asmbl_10986.p1, internal, 26422, 26667 -recovered pasa_asmbl_10986.p1, internal, 26792, 26945 -recovered pasa_asmbl_10986.p1, internal, 27250, 27392 -recovered pasa_asmbl_10986.p1, internal, 27492, 27670 -recovered pasa_asmbl_10986.p1, internal, 27840, 27996 -recovered pasa_asmbl_10986.p1, internal, 28190, 28395 -recovered pasa_asmbl_10986.p1, internal, 28601, 28680 -recovered pasa_asmbl_10986.p1, internal, 28884, 29021 -recovered pasa_asmbl_10986.p1, internal, 29269, 29413 -recovered pasa_asmbl_10986.p1, internal, 29633, 29782 -recovered pasa_asmbl_10986.p1, internal, 30320, 30434 -recovered pasa_asmbl_10986.p1, internal, 30724, 30923 -recovered pasa_asmbl_10986.p1, internal, 31128, 31286 -recovered pasa_asmbl_10986.p1, internal, 31520, 31619 Valid prediction for snap_scaffold_13-snap.1270-T1 Valid prediction for snap_scaffold_13-snap.1314-T1 Valid prediction for snap_scaffold_13-snap.1266-T1 Couldn't classify 170270, 170332 Couldn't classify 174373, 174507 Sorry, prediction pasa_asmbl_11006.p1 fails validation. (TTT) AC 170270-170332 GT AGG (GGT) AG 170502-170594 GT TTG (GGT) AG 170717-170780 GT CTG (ACC) AG 170960-171058 GT TGG (AAA) AG 171176-171279 GT ATG (GAT) AG 171472-171610 GT GGG (TGG) AG 171846-171964 GT AGG (GTG) AG 172119-172268 GT ACG (TTC) AG 172399-172569 GT AGG (CCA) AG 172757-173060 GT GGG (ACA) AG 173175-173239 GT GAG (GAG) AG 173394-173481 GT AGG (GTC) AG 173608-173725 GT AGG (ATA) AG 173899-174022 GT AGG (GTG) AG 174373-174507 AG GGA -recovered pasa_asmbl_11006.p1, internal, 170502, 170594 -recovered pasa_asmbl_11006.p1, internal, 170717, 170780 -recovered pasa_asmbl_11006.p1, internal, 170960, 171058 -recovered pasa_asmbl_11006.p1, internal, 171176, 171279 -recovered pasa_asmbl_11006.p1, internal, 171472, 171610 -recovered pasa_asmbl_11006.p1, internal, 171846, 171964 -recovered pasa_asmbl_11006.p1, internal, 172119, 172268 -recovered pasa_asmbl_11006.p1, internal, 172399, 172569 -recovered pasa_asmbl_11006.p1, internal, 172757, 173060 -recovered pasa_asmbl_11006.p1, internal, 173175, 173239 -recovered pasa_asmbl_11006.p1, internal, 173394, 173481 -recovered pasa_asmbl_11006.p1, internal, 173608, 173725 -recovered pasa_asmbl_11006.p1, internal, 173899, 174022 Couldn't classify 173756, 174022 Couldn't classify 174373, 174507 Sorry, prediction pasa_asmbl_11007.p1 fails validation. (CAA) AC 173756-174022 GT AGG (GTG) AG 174373-174507 AG GGA Valid prediction for GlimmerHMM_glimmerT_31829-T1 Couldn't classify 41316, 41386 Sorry, prediction pasa_asmbl_10989.p1 fails validation. (ATG) CC 36440-36518 GT AGG (GAT) AG 37554-37730 GT AGG (GTT) AG 37929-38049 GT AGG (CAG) AG 38315-38436 GT TGG (GGC) AG 38570-38701 GT TAG (ACA) AG 38891-39080 GT AGG (GCT) AG 39668-39780 GT TGG (GGC) AG 40029-40247 GT TGG (GTG) AG 40415-40591 GT TGG (GTT) AG 40890-41123 GT ACG (CTT) AG 41316-41386 GG AGG -recovered pasa_asmbl_10989.p1, initial, 36440, 36518 -recovered pasa_asmbl_10989.p1, terminal, 37554, 37730 -recovered pasa_asmbl_10989.p1, internal, 37554, 37730 -recovered pasa_asmbl_10989.p1, internal, 37929, 38049 -recovered pasa_asmbl_10989.p1, internal, 38315, 38436 -recovered pasa_asmbl_10989.p1, internal, 38570, 38701 -recovered pasa_asmbl_10989.p1, internal, 38891, 39080 -recovered pasa_asmbl_10989.p1, internal, 39668, 39780 -recovered pasa_asmbl_10989.p1, internal, 40029, 40247 -recovered pasa_asmbl_10989.p1, internal, 40415, 40591 -recovered pasa_asmbl_10989.p1, internal, 40890, 41123 Valid prediction for snap_scaffold_13-snap.1315-T1 Couldn't classify 16323, 16628 Couldn't classify 24838, 24874 Sorry, prediction pasa_asmbl_10985.p1 fails validation. (GGT) CA 16323-16628 GT AGG (GAA) AG 18782-18912 GT AGG (GTG) AG 20417-20583 GT ACG (CCT) AG 21239-21427 GT GGG (GCT) AG 21967-22084 GT AGG (CCC) AG 22499-22597 GT AGG (ATG) AG 23872-24008 GT GGG (ATG) AG 24176-24298 GT AGG (AGA) AG 24534-24723 GT AGG (GCT) AG 24838-24874 CT CCC add_exon() Sorry, pasa_asmbl_10985.p1 23872-24008-initial-1 is invalid. -recovered pasa_asmbl_10985.p1, initial, 23872, 24008 add_exon() Sorry, pasa_asmbl_10985.p1 24176-24298-initial-1 is invalid. -recovered pasa_asmbl_10985.p1, initial, 24176, 24298 -recovered pasa_asmbl_10985.p1, internal, 18782, 18912 -recovered pasa_asmbl_10985.p1, internal, 20417, 20583 -recovered pasa_asmbl_10985.p1, internal, 21239, 21427 -recovered pasa_asmbl_10985.p1, internal, 21967, 22084 -recovered pasa_asmbl_10985.p1, internal, 22499, 22597 -recovered pasa_asmbl_10985.p1, internal, 23872, 24008 -recovered pasa_asmbl_10985.p1, internal, 24176, 24298 -recovered pasa_asmbl_10985.p1, internal, 24534, 24723 Valid prediction for snap_scaffold_13-snap.1311-T1 Valid prediction for snap_scaffold_13-snap.1285-T1 Valid prediction for GlimmerHMM_glimmerT_31859-T1 Valid prediction for GlimmerHMM_glimmerT_31821-T1 Valid prediction for pasa_asmbl_10990.p1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_9847.p1 Valid prediction for GlimmerHMM_glimmerT_31852-T1 Valid prediction for GlimmerHMM_glimmerT_31851-T1 Valid prediction for HiQ_model.g21191.t1 Valid prediction for GlimmerHMM_glimmerT_31844-T1 Valid prediction for GlimmerHMM_glimmerT_31822-T1 Couldn't classify 222646, 222669 Couldn't classify 223115, 223201 Sorry, prediction pasa_asmbl_10445.p1 fails validation. (AGG) TG 222646-222669 GT AGG (GAT) AG 222814-223017 GT AGG (AAC) AG 223115-223201 AG CCA -recovered pasa_asmbl_10445.p1, internal, 222814, 223017 Valid prediction for snap_scaffold_13-snap.1305-T1 Valid prediction for pasa_asmbl_9852.p1 Valid prediction for snap_scaffold_13-snap.1299-T1 Valid prediction for snap_scaffold_13-snap.1278-T1 Couldn't classify 187090, 187479 Sorry, prediction pasa_asmbl_9842.p1 fails validation. (GCT) AG 187090-187479 GT AGG -recovered pasa_asmbl_9842.p1, internal, 187090, 187479 Valid prediction for snap_scaffold_13-snap.1284-T1 Valid prediction for snap_scaffold_13-snap.1301-T1 Valid prediction for snap_scaffold_13-snap.1288-T1 Couldn't classify 188470, 188597 Couldn't classify 189026, 189190 Sorry, prediction pasa_asmbl_9841.p1 fails validation. (GAG) TT 188470-188597 GT AAG (GAA) AG 188717-188900 GT AGG (GTT) AG 189026-189190 CG AAC -recovered pasa_asmbl_9841.p1, internal, 188717, 188900 Valid prediction for Augustus_model.g21214.t1 Valid prediction for HiQ_model.g21208.t1 Valid prediction for snap_scaffold_13-snap.1267-T1 Valid prediction for GlimmerHMM_glimmerT_31857-T1 Couldn't classify 183488, 183590 Couldn't classify 184836, 184970 Sorry, prediction pasa_asmbl_9843.p1 fails validation. (CTG) GG 183488-183590 GT GGG (ATA) AG 183746-183810 GT GAG (GAG) AG 183931-184018 GT AGG (GAT) AG 184132-184249 GT CGG (ATA) AG 184331-184454 GT AGG (GTG) AG 184836-184970 AG GGA -recovered pasa_asmbl_9843.p1, internal, 183746, 183810 -recovered pasa_asmbl_9843.p1, internal, 183931, 184018 -recovered pasa_asmbl_9843.p1, internal, 184132, 184249 -recovered pasa_asmbl_9843.p1, internal, 184331, 184454 Valid prediction for GlimmerHMM_glimmerT_31836-T1 Valid prediction for HiQ_model.g21190.t1 Valid prediction for GlimmerHMM_glimmerT_31850-T1 Valid prediction for GlimmerHMM_glimmerT_31835-T1 Valid prediction for snap_scaffold_13-snap.1281-T1 Valid prediction for snap_scaffold_13-snap.1307-T1 Valid prediction for snap_scaffold_13-snap.1282-T1 Valid prediction for Augustus_model.g21196.t1 Valid prediction for snap_scaffold_13-snap.1296-T1 Couldn't classify 71896, 72159 Sorry, prediction pasa_asmbl_9857.p1 fails validation. (CGG) AG 71896-72159 GT TGG (GCT) AG 72463-72554 GT AAG (AAC) AG 72718-72907 GT CTG (AGC) AG 73210-73326 GT AGG (GCT) AG 73537-73611 GT AGG (GTG) AG 73742-73933 TC GAT -recovered pasa_asmbl_9857.p1, terminal, 73742, 73933 -recovered pasa_asmbl_9857.p1, internal, 71896, 72159 -recovered pasa_asmbl_9857.p1, internal, 72463, 72554 -recovered pasa_asmbl_9857.p1, internal, 72718, 72907 -recovered pasa_asmbl_9857.p1, internal, 73210, 73326 -recovered pasa_asmbl_9857.p1, internal, 73537, 73611 Valid prediction for GlimmerHMM_glimmerT_31845-T1 Valid prediction for GlimmerHMM_glimmerT_31846-T1 Valid prediction for HiQ_model.g21201.t1 Valid prediction for CodingQuarry_transcript_13096-T1 Valid prediction for snap_scaffold_13-snap.1298-T1 Couldn't classify 258942, 259004 Sorry, prediction pasa_asmbl_9831.p2 fails validation. (GGT) GA 258942-259004 GT AGG (ACT) AG 259086-259181 GT CGG (GAG) AG 259315-259446 GT AGG (GCA) AG 259666-259683 AC AGA -recovered pasa_asmbl_9831.p2, terminal, 259666, 259683 -recovered pasa_asmbl_9831.p2, internal, 259086, 259181 -recovered pasa_asmbl_9831.p2, internal, 259315, 259446 Couldn't classify 255720, 255830 Couldn't classify 256078, 256269 Sorry, prediction pasa_asmbl_9834.p1 fails validation. (GGT) TT 255720-255830 GT AGG (GCT) AG 256078-256269 GC AGG -recovered pasa_asmbl_9834.p1, internal, 256078, 256269 Valid prediction for snap_scaffold_13-snap.1302-T1 Valid prediction for snap_scaffold_13-snap.1287-T1 Valid prediction for GlimmerHMM_glimmerT_31853-T1 Valid prediction for GlimmerHMM_glimmerT_31847-T1 Valid prediction for GlimmerHMM_glimmerT_31833-T1 Valid prediction for CodingQuarry_transcript_13098-T1 Valid prediction for Augustus_model.g21202.t1 Valid prediction for snap_scaffold_13-snap.1309-T1 Valid prediction for Augustus_model.g21205.t1 Valid prediction for Augustus_model.g21198.t1 Valid prediction for snap_scaffold_13-snap.1297-T1 Couldn't classify 241302, 241472 Couldn't classify 241758, 241853 Sorry, prediction pasa_asmbl_10413.p1 fails validation. (GCG) AG 241302-241472 GT GAG (GTG) AG 241572-241676 GT AGG (ACT) AG 241758-241853 GT CGG -recovered pasa_asmbl_10413.p1, internal, 241302, 241472 -recovered pasa_asmbl_10413.p1, internal, 241572, 241676 -recovered pasa_asmbl_10413.p1, internal, 241758, 241853 Valid prediction for snap_scaffold_13-snap.1291-T1 Valid prediction for HiQ_model.g21209.t1 Valid prediction for GlimmerHMM_glimmerT_31858-T1 Valid prediction for GlimmerHMM_glimmerT_31840-T1 Valid prediction for snap_scaffold_13-snap.1316-T1 Valid prediction for GlimmerHMM_glimmerT_31849-T1 Couldn't classify 388955, 389050 Sorry, prediction pasa_asmbl_9816.p1 fails validation. (ATG) TA 385433-385517 GT TGG (AAA) AG 387309-387397 GT CTG (GGC) AG 388222-388289 GT AGG (AGT) AG 388490-388568 GT AGG (AGG) AG 388955-389050 CA ACC -recovered pasa_asmbl_9816.p1, initial, 385433, 385517 add_exon() Sorry, pasa_asmbl_9816.p1 388222-388289-terminal-2 is invalid. -recovered pasa_asmbl_9816.p1, terminal, 388222, 388289 -recovered pasa_asmbl_9816.p1, internal, 387309, 387397 -recovered pasa_asmbl_9816.p1, internal, 388222, 388289 -recovered pasa_asmbl_9816.p1, internal, 388490, 388568 Valid prediction for GlimmerHMM_glimmerT_31834-T1 Valid prediction for snap_scaffold_13-snap.1292-T1 Valid prediction for Augustus_model.g21207.t1 Valid prediction for snap_scaffold_13-snap.1283-T1 Valid prediction for GlimmerHMM_glimmerT_31842-T1 Valid prediction for snap_scaffold_13-snap.1304-T1 Valid prediction for snap_scaffold_13-snap.1306-T1 Valid prediction for CodingQuarry_transcript_13095-T1 Valid prediction for Augustus_model.g21206.t1 Valid prediction for GlimmerHMM_glimmerT_31848-T1 Valid prediction for snap_scaffold_13-snap.1290-T1 Valid prediction for snap_scaffold_13-snap.1289-T1 Couldn't classify 218685, 218828 Couldn't classify 220350, 220418 Sorry, prediction pasa_asmbl_10346.p1 fails validation. (GAG) TG 218685-218828 GT AGG (GTT) AG 218926-219102 GT ATG (CTT) AG 219259-219404 GT AAG (GAA) AG 219526-219616 GT AGG (GCT) AG 219785-220174 GT AGG (GGC) AG 220350-220418 AA AGA -recovered pasa_asmbl_10346.p1, internal, 218926, 219102 -recovered pasa_asmbl_10346.p1, internal, 219259, 219404 -recovered pasa_asmbl_10346.p1, internal, 219526, 219616 -recovered pasa_asmbl_10346.p1, internal, 219785, 220174 Valid prediction for snap_scaffold_13-snap.1294-T1 Valid prediction for pasa_asmbl_9863.p1 Valid prediction for GlimmerHMM_glimmerT_31837-T1 Valid prediction for snap_scaffold_13-snap.1279-T1 Valid prediction for snap_scaffold_13-snap.1317-T1 Couldn't classify 185560, 185796 Couldn't classify 185885, 186001 Sorry, prediction pasa_asmbl_10322.p2 fails validation. (GAG) CA 185560-185796 GT AGG (GTT) AG 185885-186001 GA AGG Couldn't classify 254540, 254615 Sorry, prediction pasa_asmbl_9835.p1 fails validation. (ATG) CC 247764-247970 GT AGG (GTC) AG 248186-248329 GT ACG (ACC) AG 248428-248584 GT TGG (ATA) AG 248816-248843 GT ACG (TGG) AG 249045-249159 GT AGG (GGT) AG 249486-249578 GT TTG (GGT) AG 249768-249831 GT CTG (ACC) AG 249925-250023 GT TGG (AAA) AG 250139-250242 GT ATG (GAT) AG 250392-250530 GT GGG (TGG) AG 250646-250764 GT AGG (GTG) AG 250936-251085 GT ATG (TTC) AG 251259-251429 GT AGG (CCA) AG 251501-251804 GT GGG (ACA) AG 251929-251993 GT GAG (GAG) AG 252151-252238 GT AGG (GAT) AG 252342-252459 GT AGG (GTA) AG 252539-252662 GT AGG (GTG) AG 252971-253107 GT AGG (AGA) AG 253313-253568 GT CTG (GAA) AG 253665-253907 GT AGG (GTA) AG 254010-254186 GT ACG (CTT) AG 254272-254417 GT AAG (GAA) AG 254540-254615 AT AGA -recovered pasa_asmbl_9835.p1, initial, 247764, 247970 -recovered pasa_asmbl_9835.p1, internal, 248186, 248329 -recovered pasa_asmbl_9835.p1, internal, 248428, 248584 -recovered pasa_asmbl_9835.p1, internal, 248816, 248843 -recovered pasa_asmbl_9835.p1, internal, 249045, 249159 -recovered pasa_asmbl_9835.p1, internal, 249486, 249578 -recovered pasa_asmbl_9835.p1, internal, 249768, 249831 -recovered pasa_asmbl_9835.p1, internal, 249925, 250023 -recovered pasa_asmbl_9835.p1, internal, 250139, 250242 -recovered pasa_asmbl_9835.p1, internal, 250392, 250530 -recovered pasa_asmbl_9835.p1, internal, 250646, 250764 -recovered pasa_asmbl_9835.p1, internal, 250936, 251085 -recovered pasa_asmbl_9835.p1, internal, 251259, 251429 -recovered pasa_asmbl_9835.p1, internal, 251501, 251804 -recovered pasa_asmbl_9835.p1, internal, 251929, 251993 -recovered pasa_asmbl_9835.p1, internal, 252151, 252238 -recovered pasa_asmbl_9835.p1, internal, 252342, 252459 -recovered pasa_asmbl_9835.p1, internal, 252539, 252662 -recovered pasa_asmbl_9835.p1, internal, 252971, 253107 -recovered pasa_asmbl_9835.p1, internal, 253313, 253568 -recovered pasa_asmbl_9835.p1, internal, 253665, 253907 -recovered pasa_asmbl_9835.p1, internal, 254010, 254186 -recovered pasa_asmbl_9835.p1, internal, 254272, 254417 Valid prediction for Augustus_model.g21184.t1 Valid prediction for GlimmerHMM_glimmerT_31841-T1 Valid prediction for Augustus_model.g21195.t1 Valid prediction for GlimmerHMM_glimmerT_31825-T1 Valid prediction for snap_scaffold_13-snap.1293-T1 Valid prediction for pasa_asmbl_9824.p1 Valid prediction for Augustus_model.g21197.t1 Valid prediction for GlimmerHMM_glimmerT_31824-T1 Couldn't classify 239827, 239850 Sorry, prediction pasa_asmbl_9838.p1 fails validation. (ATG) AC 235964-236089 GT CTG (GAA) AG 236221-236463 GT AGG (GTT) AG 236561-236737 GT ATG (CTT) AG 236875-237020 GT AAG (GAA) AG 237142-237232 GT AGG (GCT) AG 237401-237790 GT AGG (GGC) AG 237962-238088 GT TGG (GTG) AG 238249-238367 GT AGG (GCT) AG 238614-238810 GT AAG (GAA) AG 238965-239148 GT AGG (GTT) AG 239281-239446 GT ACG (AGG) AG 239614-239738 GT AGG (GGA) AG 239827-239850 AA CCA -recovered pasa_asmbl_9838.p1, initial, 235964, 236089 -recovered pasa_asmbl_9838.p1, internal, 236221, 236463 -recovered pasa_asmbl_9838.p1, internal, 236561, 236737 -recovered pasa_asmbl_9838.p1, internal, 236875, 237020 -recovered pasa_asmbl_9838.p1, internal, 237142, 237232 -recovered pasa_asmbl_9838.p1, internal, 237401, 237790 -recovered pasa_asmbl_9838.p1, internal, 237962, 238088 -recovered pasa_asmbl_9838.p1, internal, 238249, 238367 -recovered pasa_asmbl_9838.p1, internal, 238614, 238810 -recovered pasa_asmbl_9838.p1, internal, 238965, 239148 -recovered pasa_asmbl_9838.p1, internal, 239281, 239446 -recovered pasa_asmbl_9838.p1, internal, 239614, 239738 Valid prediction for GlimmerHMM_glimmerT_31832-T1 Valid prediction for GlimmerHMM_glimmerT_31838-T1 Valid prediction for GlimmerHMM_glimmerT_31843-T1 Couldn't classify 190196, 190396 Couldn't classify 191376, 191468 Sorry, prediction pasa_asmbl_10400.p1 fails validation. (GCC) AT 190196-190396 GT AGG (AAC) AG 190500-190625 GT ATG (GCG) AG 191053-191223 GT GGG (GTG) AG 191376-191468 CT AGC -recovered pasa_asmbl_10400.p1, internal, 190500, 190625 -recovered pasa_asmbl_10400.p1, internal, 191053, 191223 Valid prediction for Augustus_model.g21199.t1 Valid prediction for Augustus_model.g21204.t1 Valid prediction for CodingQuarry_transcript_13099-T1 Couldn't classify 231861, 231920 Couldn't classify 232985, 233100 Sorry, prediction pasa_asmbl_10340.p1 fails validation. (CCT) AC 231861-231920 GT TTG (GGT) AG 232104-232167 GT CTG (ACT) AG 232266-232364 GT TGG (AAA) AG 232482-232585 GT ATG (GAT) AG 232731-232869 GT AGG (TGG) AG 232985-233100 CA CTC -recovered pasa_asmbl_10340.p1, internal, 232104, 232167 -recovered pasa_asmbl_10340.p1, internal, 232266, 232364 -recovered pasa_asmbl_10340.p1, internal, 232482, 232585 -recovered pasa_asmbl_10340.p1, internal, 232731, 232869 Valid prediction for CodingQuarry_transcript_13097-T1 Valid prediction for CodingQuarry_transcript_13100-T1 Valid prediction for GlimmerHMM_glimmerT_31839-T1 Valid prediction for snap_scaffold_13-snap.1262-T1 Valid prediction for Augustus_model.g21200.t1 Couldn't classify 213163, 213306 Sorry, prediction pasa_asmbl_10367.p2 fails validation. (ATG) AG 212747-212935 GT AGG (ACT) AG 213163-213306 GT ACG -recovered pasa_asmbl_10367.p2, initial, 212747, 212935 -recovered pasa_asmbl_10367.p2, internal, 212747, 212935 -recovered pasa_asmbl_10367.p2, internal, 213163, 213306 Couldn't classify 295324, 295740 Sorry, prediction pasa_asmbl_11666.p1 fails validation. (ATG) CG 295324-295740 CT ACC Valid prediction for Augustus_model.g21186.t1 Valid prediction for snap_scaffold_13-snap.1295-T1 Couldn't classify 233688, 233705 Couldn't classify 234549, 234587 Sorry, prediction pasa_asmbl_9839.p1 fails validation. (ATT) GC 233688-233705 GT AGG (CCA) AG 233777-234080 GT GGG (ACA) AG 234333-234397 GT GAG (GAG) AG 234549-234587 CA CCC -recovered pasa_asmbl_9839.p1, internal, 233777, 234080 -recovered pasa_asmbl_9839.p1, internal, 234333, 234397 Valid prediction for snap_scaffold_13-snap.1300-T1 Valid prediction for Augustus_model.g21203.t1 Valid prediction for snap_scaffold_13-snap.1260-T1 Couldn't classify 180739, 180755 Couldn't classify 182897, 182959 Sorry, prediction pasa_asmbl_9844.p1 fails validation. (CAG) AC 180739-180755 GT ACG (TGG) AG 180859-180973 GT AGG (GGT) AG 181259-181351 GT TTG (GGT) AG 181440-181503 GT TTG (ACC) AG 181619-181717 GT TGG (AGA) AG 181859-181962 GT ATG (GAT) AG 182044-182182 GT TGG (TTG) AG 182286-182404 GT AGG (GTA) AG 182557-182706 GT ACG (TAC) AG 182897-182959 CA ACC -recovered pasa_asmbl_9844.p1, internal, 180859, 180973 -recovered pasa_asmbl_9844.p1, internal, 181259, 181351 -recovered pasa_asmbl_9844.p1, internal, 181440, 181503 -recovered pasa_asmbl_9844.p1, internal, 181619, 181717 -recovered pasa_asmbl_9844.p1, internal, 181859, 181962 -recovered pasa_asmbl_9844.p1, internal, 182044, 182182 -recovered pasa_asmbl_9844.p1, internal, 182286, 182404 -recovered pasa_asmbl_9844.p1, internal, 182557, 182706 Valid prediction for snap_scaffold_13-snap.1303-T1 Valid prediction for GlimmerHMM_glimmerT_31831-T1 Valid prediction for snap_scaffold_13-snap.1280-T1 Valid prediction for snap_scaffold_13-snap.1308-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 123298, rend_intergenic: 121296 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124525, rend_intergenic: 123406 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209448, rend_intergenic: 199575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218485, rend_intergenic: 216386 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 439649 -exon list size: 1010 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 42 predictions from path traversal Error with prediction: snap lend_intergenic: 123298, rend_intergenic: 121296 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124525, rend_intergenic: 123406 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209448, rend_intergenic: 199575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218485, rend_intergenic: 216386 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 41 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 16283 -exon list size: 3 building trellis 20.0 40.0 60.0 80.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 16063 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11633 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support