-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_5675812-5924824 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.1094-T1 Valid prediction for GlimmerHMM_glimmerT_31716-T1 Valid prediction for snap_scaffold_13-snap.1106-T1 Valid prediction for Augustus_model.g21109.t1 Couldn't classify 104510, 105674 Sorry, prediction pasa_asmbl_10892.p1 fails validation. (TCC) CC 104510-105674 GT AGG (TAT) AG 106032-106138 CC GAC -recovered pasa_asmbl_10892.p1, terminal, 106032, 106138 Valid prediction for snap_scaffold_13-snap.1096-T1 Valid prediction for snap_scaffold_13-snap.1083-T1 Valid prediction for snap_scaffold_13-snap.1092-T1 Valid prediction for GlimmerHMM_glimmerT_31714-T1 Valid prediction for pasa_asmbl_10905.p1 Valid prediction for GlimmerHMM_glimmerT_31721-T1 Valid prediction for snap_scaffold_13-snap.1091-T1 Valid prediction for Augustus_model.g21104.t1 Valid prediction for HiQ_model.g21112.t1 Valid prediction for GlimmerHMM_glimmerT_31723-T1 Couldn't classify 120264, 120328 Sorry, prediction pasa_asmbl_10899.p1 fails validation. (GGA) TA 120264-120328 GT AAG (CTT) AG 121091-121182 GT GGG (TTT) AG 121279-121336 GT AGG (AAA) AG 121598-121755 GT GGG (TGA) AG 122168-122990 GT GGG (AAT) AG 125662-127107 GT CTG (GGA) AG 127630-127794 GT AGG (GCA) AG 128059-128093 GC AGG (GGG) AG 128750-128814 GT GGG (GAG) AG 128955-129091 GT ACG (TAC) AG 129604-129699 GT AGG (CCT) AG 130677-130995 GT AGG (GAT) AG 131397-131462 GT AAG (CTG) AG 132158-132896 GT AGG (ATC) AG 133990-134536 GT AGG (ACT) AG 135439-135571 GT AGG (GAG) AG 136696-136746 GT GGG (GAG) AG 137665-137742 GT AGG (AGG) AG 138406-138553 GT AGG (GGC) AG 138675-138770 GT TGG (AAA) AG 138997-139077 GT AGG (TGG) AG 139354-139531 GT AAG (GTT) AG 139781-139953 GT GAG (TGA) AG 140128-140283 GT AGG (GTC) AG 141505-141641 GT AAG (GCC) AG 142188-142335 GT GTG (CGG) AG 142494-142639 GT AGG (GTG) AG 142978-143153 GT AGG (GAA) AG 143468-143615 GT AAG (GAG) AG 143723-144005 GT AGG (TTG) AG 144232-144383 GT AGG (GTG) AG 144865-144970 GT GGG (GTG) AG 145176-145383 GT CAG (ATG) AG 145499-145632 GT AGG (ATC) AG 145878-146033 GT TGG (CTC) AG 146195-146338 GT AGG (AGA) AG 146446-146567 GT GGG (GAG) AG 146819-146974 GT AGG (AAA) AG 147632-147718 GA AGG -recovered pasa_asmbl_10899.p1, initial, 145499, 145632 add_exon() Sorry, pasa_asmbl_10899.p1 127630-127794-terminal-1 is invalid. -recovered pasa_asmbl_10899.p1, terminal, 127630, 127794 add_exon() Sorry, pasa_asmbl_10899.p1 142978-143153-terminal-2 is invalid. -recovered pasa_asmbl_10899.p1, terminal, 142978, 143153 -recovered pasa_asmbl_10899.p1, terminal, 147632, 147718 -recovered pasa_asmbl_10899.p1, internal, 121091, 121182 -recovered pasa_asmbl_10899.p1, internal, 121279, 121336 -recovered pasa_asmbl_10899.p1, internal, 121598, 121755 -recovered pasa_asmbl_10899.p1, internal, 122168, 122990 -recovered pasa_asmbl_10899.p1, internal, 125662, 127107 -recovered pasa_asmbl_10899.p1, internal, 127630, 127794 -recovered pasa_asmbl_10899.p1, internal, 128059, 128093 -recovered pasa_asmbl_10899.p1, internal, 128750, 128814 -recovered pasa_asmbl_10899.p1, internal, 128955, 129091 -recovered pasa_asmbl_10899.p1, internal, 129604, 129699 -recovered pasa_asmbl_10899.p1, internal, 130677, 130995 -recovered pasa_asmbl_10899.p1, internal, 131397, 131462 -recovered pasa_asmbl_10899.p1, internal, 132158, 132896 -recovered pasa_asmbl_10899.p1, internal, 133990, 134536 -recovered pasa_asmbl_10899.p1, internal, 135439, 135571 -recovered pasa_asmbl_10899.p1, internal, 136696, 136746 -recovered pasa_asmbl_10899.p1, internal, 137665, 137742 -recovered pasa_asmbl_10899.p1, internal, 138406, 138553 -recovered pasa_asmbl_10899.p1, internal, 138675, 138770 -recovered pasa_asmbl_10899.p1, internal, 138997, 139077 -recovered pasa_asmbl_10899.p1, internal, 139354, 139531 -recovered pasa_asmbl_10899.p1, internal, 139781, 139953 -recovered pasa_asmbl_10899.p1, internal, 140128, 140283 -recovered pasa_asmbl_10899.p1, internal, 141505, 141641 -recovered pasa_asmbl_10899.p1, internal, 142188, 142335 -recovered pasa_asmbl_10899.p1, internal, 142494, 142639 -recovered pasa_asmbl_10899.p1, internal, 142978, 143153 -recovered pasa_asmbl_10899.p1, internal, 143468, 143615 -recovered pasa_asmbl_10899.p1, internal, 143723, 144005 -recovered pasa_asmbl_10899.p1, internal, 144232, 144383 -recovered pasa_asmbl_10899.p1, internal, 144865, 144970 -recovered pasa_asmbl_10899.p1, internal, 145176, 145383 -recovered pasa_asmbl_10899.p1, internal, 145499, 145632 -recovered pasa_asmbl_10899.p1, internal, 145878, 146033 -recovered pasa_asmbl_10899.p1, internal, 146195, 146338 -recovered pasa_asmbl_10899.p1, internal, 146446, 146567 -recovered pasa_asmbl_10899.p1, internal, 146819, 146974 Valid prediction for snap_scaffold_13-snap.1110-T1 Valid prediction for snap_scaffold_13-snap.1093-T1 Valid prediction for snap_scaffold_13-snap.1108-T1 Valid prediction for CodingQuarry_transcript_13049-T1 Valid prediction for snap_scaffold_13-snap.1082-T1 Valid prediction for Augustus_model.g21103.t1 Valid prediction for snap_scaffold_13-snap.1100-T1 Valid prediction for GlimmerHMM_glimmerT_31712-T1 Valid prediction for snap_scaffold_13-snap.1111-T1 Valid prediction for HiQ_model.g21105.t1 Valid prediction for snap_scaffold_13-snap.1105-T1 Valid prediction for HiQ_model.g21113.t1 Couldn't classify 111914, 112291 Sorry, prediction pasa_asmbl_10897.p1 fails validation. (CAC) CA 111914-112291 GG AGG Valid prediction for pasa_asmbl_10907.p1 Valid prediction for pasa_asmbl_10908.p1 Valid prediction for CodingQuarry_transcript_13052-T1 Valid prediction for GlimmerHMM_glimmerT_31711-T1 Valid prediction for snap_scaffold_13-snap.1107-T1 Valid prediction for snap_scaffold_13-snap.1084-T1 Valid prediction for snap_scaffold_13-snap.1080-T1 Valid prediction for GlimmerHMM_glimmerT_31720-T1 Valid prediction for HiQ_model.g21110.t1 Valid prediction for GlimmerHMM_glimmerT_31717-T1 Valid prediction for GlimmerHMM_glimmerT_31704-T1 Valid prediction for snap_scaffold_13-snap.1078-T1 Valid prediction for CodingQuarry_transcript_13053-T1 Valid prediction for snap_scaffold_13-snap.1075-T1 Valid prediction for snap_scaffold_13-snap.1097-T1 Valid prediction for GlimmerHMM_glimmerT_31724-T1 Couldn't classify 103085, 103975 Sorry, prediction pasa_asmbl_10891.p1 fails validation. (GAC) GT 103085-103975 GA AGG -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 32040, 32203 Couldn't classify 34937, 35013 Sorry, prediction pasa_asmbl_9743.p1 fails validation. (AAG) AC 32040-32203 GT GGG (ACA) AG 32508-32592 GT AGG (GTG) AG 32692-32857 GT TAG (GTG) AG 33227-33378 GT AGG (CTG) AG 33634-33762 GT AGG (TTG) AG 33943-34101 GT AGG (ATC) AG 34308-34461 GT CGG (GTG) AG 34545-34632 GT AGG (GAT) AG 34712-34752 GT AGG (TGG) AG 34937-35013 CA TGC -recovered pasa_asmbl_9743.p1, terminal, 34712, 34752 -recovered pasa_asmbl_9743.p1, internal, 32508, 32592 -recovered pasa_asmbl_9743.p1, internal, 32692, 32857 -recovered pasa_asmbl_9743.p1, internal, 33227, 33378 -recovered pasa_asmbl_9743.p1, internal, 33634, 33762 -recovered pasa_asmbl_9743.p1, internal, 33943, 34101 -recovered pasa_asmbl_9743.p1, internal, 34308, 34461 -recovered pasa_asmbl_9743.p1, internal, 34545, 34632 -recovered pasa_asmbl_9743.p1, internal, 34712, 34752 Valid prediction for pasa_asmbl_9740.p1 Valid prediction for snap_scaffold_13-snap.1079-T1 Valid prediction for GlimmerHMM_glimmerT_31708-T1 Valid prediction for GlimmerHMM_glimmerT_31703-T1 Valid prediction for snap_scaffold_13-snap.1101-T1 Valid prediction for snap_scaffold_13-snap.1112-T1 Valid prediction for snap_scaffold_13-snap.1113-T1 Valid prediction for CodingQuarry_transcript_13048-T1 Valid prediction for pasa_asmbl_9730.p1 Valid prediction for GlimmerHMM_glimmerT_31713-T1 Valid prediction for Augustus_model.g21097.t1 Valid prediction for Augustus_model.g21098.t1 Valid prediction for snap_scaffold_13-snap.1077-T1 Valid prediction for GlimmerHMM_glimmerT_31726-T1 Valid prediction for Augustus_model.g21101.t1 Valid prediction for HiQ_model.g21095.t1 Couldn't classify 28613, 28629 Couldn't classify 29338, 29403 Sorry, prediction pasa_asmbl_10376.p1 fails validation. (GGA) AT 28613-28629 GT AAG (GTC) AG 28903-29137 GT AGG (GTG) AG 29338-29403 AT GGA -recovered pasa_asmbl_10376.p1, internal, 28903, 29137 Valid prediction for HiQ_model.g21111.t1 Valid prediction for GlimmerHMM_glimmerT_31706-T1 Valid prediction for snap_scaffold_13-snap.1103-T1 Valid prediction for snap_scaffold_13-snap.1088-T1 Valid prediction for snap_scaffold_13-snap.1081-T1 Valid prediction for pasa_asmbl_9708.p1 Valid prediction for CodingQuarry_transcript_13047-T1 Couldn't classify 1267, 1383 Sorry, prediction pasa_asmbl_9748.p1 fails validation. (GTG) CA 1267-1383 GT TGG (GGC) AG 1635-1919 GT TGG (AAC) AG 2328-2405 GT AGG (GGG) AG 2519-2747 GT CGG (GTA) AG 3797-3977 GT AGG (CAT) AG 4222-4420 GT AGG (GTG) AG 4633-4722 GT CTG (AAT) AG 5138-5149 CG GAC -recovered pasa_asmbl_9748.p1, terminal, 5138, 5149 -recovered pasa_asmbl_9748.p1, internal, 1635, 1919 -recovered pasa_asmbl_9748.p1, internal, 2328, 2405 -recovered pasa_asmbl_9748.p1, internal, 2519, 2747 -recovered pasa_asmbl_9748.p1, internal, 3797, 3977 -recovered pasa_asmbl_9748.p1, internal, 4222, 4420 -recovered pasa_asmbl_9748.p1, internal, 4633, 4722 Valid prediction for snap_scaffold_13-snap.1095-T1 Valid prediction for GlimmerHMM_glimmerT_31702-T1 Valid prediction for snap_scaffold_13-snap.1087-T1 Valid prediction for Augustus_model.g21116.t1 Valid prediction for pasa_asmbl_9706.p1 Valid prediction for HiQ_model.g21108.t1 Valid prediction for snap_scaffold_13-snap.1089-T1 Valid prediction for HiQ_model.g21096.t1 Valid prediction for snap_scaffold_13-snap.1102-T1 Valid prediction for CodingQuarry_transcript_13045-T1 Valid prediction for snap_scaffold_13-snap.1090-T1 Valid prediction for Augustus_model.g21099.t1 Couldn't classify 163116, 163242 Sorry, prediction pasa_asmbl_9724.p1 fails validation. (AAT) AA 163116-163242 GT CGG (GTA) AG 163574-163644 GT AGG (GTC) AG 163778-163857 GT TGG (GTA) AG 163952-164089 GT AGG (TGC) AG 164199-164290 GT CGG (TGG) AG 164828-164964 GT TTG (TCT) AG 165132-165245 GT ACG (GAC) AG 165519-165596 GT AAG -recovered pasa_asmbl_9724.p1, terminal, 165519, 165596 -recovered pasa_asmbl_9724.p1, internal, 163574, 163644 -recovered pasa_asmbl_9724.p1, internal, 163778, 163857 -recovered pasa_asmbl_9724.p1, internal, 163952, 164089 -recovered pasa_asmbl_9724.p1, internal, 164199, 164290 -recovered pasa_asmbl_9724.p1, internal, 164828, 164964 -recovered pasa_asmbl_9724.p1, internal, 165132, 165245 -recovered pasa_asmbl_9724.p1, internal, 165519, 165596 Valid prediction for snap_scaffold_13-snap.1104-T1 Valid prediction for Augustus_model.g21114.t1 Valid prediction for GlimmerHMM_glimmerT_31728-T1 Valid prediction for snap_scaffold_13-snap.1109-T1 Valid prediction for GlimmerHMM_glimmerT_31709-T1 Valid prediction for GlimmerHMM_glimmerT_31705-T1 Valid prediction for GlimmerHMM_glimmerT_31725-T1 Valid prediction for snap_scaffold_13-snap.1114-T1 Valid prediction for snap_scaffold_13-snap.1085-T1 Valid prediction for pasa_asmbl_9709.p1 Valid prediction for GlimmerHMM_glimmerT_31718-T1 Valid prediction for GlimmerHMM_glimmerT_31722-T1 Valid prediction for HiQ_model.g21100.t1 Couldn't classify 35402, 35553 Sorry, prediction pasa_asmbl_9742.p1 fails validation. (GTT) AG 35402-35553 GT AGG (GTC) AG 35714-35886 GT CAG (CGA) AG 36163-36323 GT AGG (GCC) AG 36824-36954 GT AGG (GGG) AG 37313-37442 GT AGG (AAA) AG 37613-37748 GT AGG (ATA) AG 37888-38026 GT GCG (GTT) AG 38139-38196 GT TGG (GAC) AG 38412-38571 GT CAG (GGA) AG 38832-38971 GT AGG (AGA) AG 39050-39218 GT CGG (GTT) AG 39452-39590 GT AAG (TGT) AG 39718-39835 GT GGG (TTC) AG 40079-40246 CA GAC -recovered pasa_asmbl_9742.p1, terminal, 40079, 40246 -recovered pasa_asmbl_9742.p1, internal, 35402, 35553 -recovered pasa_asmbl_9742.p1, internal, 35714, 35886 -recovered pasa_asmbl_9742.p1, internal, 36163, 36323 -recovered pasa_asmbl_9742.p1, internal, 36824, 36954 -recovered pasa_asmbl_9742.p1, internal, 37313, 37442 -recovered pasa_asmbl_9742.p1, internal, 37613, 37748 -recovered pasa_asmbl_9742.p1, internal, 37888, 38026 -recovered pasa_asmbl_9742.p1, internal, 38139, 38196 -recovered pasa_asmbl_9742.p1, internal, 38412, 38571 -recovered pasa_asmbl_9742.p1, internal, 38832, 38971 -recovered pasa_asmbl_9742.p1, internal, 39050, 39218 -recovered pasa_asmbl_9742.p1, internal, 39452, 39590 -recovered pasa_asmbl_9742.p1, internal, 39718, 39835 Couldn't classify 186360, 186436 Sorry, prediction pasa_asmbl_9718.p1 fails validation. (GCC) AG 186360-186436 GT AGG (GTC) AG 186579-186670 GT AGG (ACT) AG 186784-186883 GT TGG (CGA) AG 187048-187133 GT AGG (GGG) AG 187406-187521 GT AGG (GTG) AG 188507-188617 GT AGG (GAC) AG 189201-189272 GT AGG (TCT) AG 189566-189710 GT AGG (ACT) AG 189841-189923 GT AGG (CTG) AG 190084-190236 GT AGG (ATT) AG 190660-190713 GT AGG (GAG) AG 190846-190989 GT TGG (GTG) AG 191762-191854 GT AGG (ATT) AG 191995-192069 TG GAT -recovered pasa_asmbl_9718.p1, terminal, 191995, 192069 -recovered pasa_asmbl_9718.p1, internal, 186360, 186436 -recovered pasa_asmbl_9718.p1, internal, 186579, 186670 -recovered pasa_asmbl_9718.p1, internal, 186784, 186883 -recovered pasa_asmbl_9718.p1, internal, 187048, 187133 -recovered pasa_asmbl_9718.p1, internal, 187406, 187521 -recovered pasa_asmbl_9718.p1, internal, 188507, 188617 -recovered pasa_asmbl_9718.p1, internal, 189201, 189272 -recovered pasa_asmbl_9718.p1, internal, 189566, 189710 -recovered pasa_asmbl_9718.p1, internal, 189841, 189923 -recovered pasa_asmbl_9718.p1, internal, 190084, 190236 -recovered pasa_asmbl_9718.p1, internal, 190660, 190713 -recovered pasa_asmbl_9718.p1, internal, 190846, 190989 -recovered pasa_asmbl_9718.p1, internal, 191762, 191854 Valid prediction for HiQ_model.g21102.t1 Valid prediction for snap_scaffold_13-snap.1115-T1 Valid prediction for CodingQuarry_transcript_13050-T1 Valid prediction for HiQ_model.g21107.t1 Valid prediction for snap_scaffold_13-snap.1076-T1 Valid prediction for CodingQuarry_transcript_13046-T1 Valid prediction for GlimmerHMM_glimmerT_31719-T1 Valid prediction for snap_scaffold_13-snap.1098-T1 Valid prediction for GlimmerHMM_glimmerT_31707-T1 Couldn't classify 185818, 185897 Sorry, prediction pasa_asmbl_9720.p1 fails validation. (ATG) AC 183133-183199 GT AGG (AGG) AG 184105-184404 GT CAG (CTC) AG 184630-184744 GT GGG (TGT) AG 184846-184938 GT AAG (GGT) AG 185097-185153 GT AGG (GCT) AG 185265-185323 GT TGG (AGG) AG 185507-185620 GT CGG (GGC) AG 185818-185897 CA ACC -recovered pasa_asmbl_9720.p1, initial, 183133, 183199 -recovered pasa_asmbl_9720.p1, internal, 184105, 184404 -recovered pasa_asmbl_9720.p1, internal, 184630, 184744 -recovered pasa_asmbl_9720.p1, internal, 184846, 184938 -recovered pasa_asmbl_9720.p1, internal, 185097, 185153 -recovered pasa_asmbl_9720.p1, internal, 185265, 185323 -recovered pasa_asmbl_9720.p1, internal, 185507, 185620 Valid prediction for Augustus_model.g21106.t1 Valid prediction for snap_scaffold_13-snap.1086-T1 Valid prediction for Augustus_model.g21117.t1 Valid prediction for GlimmerHMM_glimmerT_31715-T1 Valid prediction for GlimmerHMM_glimmerT_31710-T1 Valid prediction for pasa_asmbl_9731.p1 Valid prediction for CodingQuarry_transcript_13051-T1 Valid prediction for pasa_asmbl_9723.p1 Valid prediction for CodingQuarry_transcript_13044-T1 Valid prediction for Augustus_model.g21115.t1 Valid prediction for snap_scaffold_13-snap.1099-T1 Couldn't classify 197746, 197950 Couldn't classify 201467, 201512 Sorry, prediction pasa_asmbl_9717.p1 fails validation. (CCT) TC 197746-197950 GT AGG (GGC) AG 199190-199356 GT CTG (GTG) AG 200409-200622 GT GGG (TGC) AG 200872-201001 GT AGG (CAA) AG 201467-201512 GC AGG -recovered pasa_asmbl_9717.p1, internal, 199190, 199356 -recovered pasa_asmbl_9717.p1, internal, 200409, 200622 -recovered pasa_asmbl_9717.p1, internal, 200872, 201001 -recovered pasa_asmbl_9717.p1, internal, 201467, 201512 Valid prediction for GlimmerHMM_glimmerT_31727-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9657, rend_intergenic: 3511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33994, rend_intergenic: 25524 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54070, rend_intergenic: 42570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64455, rend_intergenic: 56945 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121340, rend_intergenic: 113043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142660, rend_intergenic: 132437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 249013 -exon list size: 526 building trellis 0.2 0.4 0.6 0.8 0.9 1.1 1.3 1.5 1.7 1.9 2.1 2.3 2.5 2.7 2.8 3.0 3.2 3.4 3.6 3.8 4.0 4.2 4.4 4.5 4.7 4.9 5.1 5.3 5.5 5.7 5.9 6.1 6.2 6.4 6.6 6.8 7.0 7.2 7.4 7.6 7.8 8.0 8.1 8.3 8.5 8.7 8.9 9.1 9.3 9.5 9.7 9.8 10.0 10.2 10.4 10.6 10.8 11.0 11.2 11.4 11.6 11.7 11.9 12.1 12.3 12.5 12.7 12.9 13.1 13.3 13.4 13.6 13.8 14.0 14.2 14.4 14.6 14.8 15.0 15.2 15.3 15.5 15.7 15.9 16.1 16.3 16.5 16.7 16.9 17.0 17.2 17.4 17.6 17.8 18.0 18.2 18.4 18.6 18.8 18.9 19.1 19.3 19.5 19.7 19.9 20.1 20.3 20.5 20.6 20.8 21.0 21.2 21.4 21.6 21.8 22.0 22.2 22.3 22.5 22.7 22.9 23.1 23.3 23.5 23.7 23.9 24.1 24.2 24.4 24.6 24.8 25.0 25.2 25.4 25.6 25.8 25.9 26.1 26.3 26.5 26.7 26.9 27.1 27.3 27.5 27.7 27.8 28.0 28.2 28.4 28.6 28.8 29.0 29.2 29.4 29.5 29.7 29.9 30.1 30.3 30.5 30.7 30.9 31.1 31.2 31.4 31.6 31.8 32.0 32.2 32.4 32.6 32.8 33.0 33.1 33.3 33.5 33.7 33.9 34.1 34.3 34.5 34.7 34.8 35.0 35.2 35.4 35.6 35.8 36.0 36.2 36.4 36.6 36.7 36.9 37.1 37.3 37.5 37.7 37.9 38.1 38.3 38.4 38.6 38.8 39.0 39.2 39.4 39.6 39.8 40.0 40.2 40.3 40.5 40.7 40.9 41.1 41.3 41.5 41.7 41.9 42.0 42.2 42.4 42.6 42.8 43.0 43.2 43.4 43.6 43.8 43.9 44.1 44.3 44.5 44.7 44.9 45.1 45.3 45.5 45.6 45.8 46.0 46.2 46.4 46.6 46.8 47.0 47.2 47.3 47.5 47.7 47.9 48.1 48.3 48.5 48.7 48.9 49.1 49.2 49.4 49.6 49.8 50.0 50.2 50.4 50.6 50.8 50.9 51.1 51.3 51.5 51.7 51.9 52.1 52.3 52.5 52.7 52.8 53.0 53.2 53.4 53.6 53.8 54.0 54.2 54.4 54.5 54.7 54.9 55.1 55.3 55.5 55.7 55.9 56.1 56.2 56.4 56.6 56.8 57.0 57.2 57.4 57.6 57.8 58.0 58.1 58.3 58.5 58.7 58.9 59.1 59.3 59.5 59.7 59.8 60.0 60.2 60.4 60.6 60.8 61.0 61.2 61.4 61.6 61.7 61.9 62.1 62.3 62.5 62.7 62.9 63.1 63.3 63.4 63.6 63.8 64.0 64.2 64.4 64.6 64.8 65.0 65.2 65.3 65.5 65.7 65.9 66.1 66.3 66.5 66.7 66.9 67.0 67.2 67.4 67.6 67.8 68.0 68.2 68.4 68.6 68.8 68.9 69.1 69.3 69.5 69.7 69.9 70.1 70.3 70.5 70.6 70.8 71.0 71.2 71.4 71.6 71.8 72.0 72.2 72.3 72.5 72.7 72.9 73.1 73.3 73.5 73.7 73.9 74.1 74.2 74.4 74.6 74.8 75.0 75.2 75.4 75.6 75.8 75.9 76.1 76.3 76.5 76.7 76.9 77.1 77.3 77.5 77.7 77.8 78.0 78.2 78.4 78.6 78.8 79.0 79.2 79.4 79.5 79.7 79.9 80.1 80.3 80.5 80.7 80.9 81.1 81.2 81.4 81.6 81.8 82.0 82.2 82.4 82.6 82.8 83.0 83.1 83.3 83.5 83.7 83.9 84.1 84.3 84.5 84.7 84.8 85.0 85.2 85.4 85.6 85.8 86.0 86.2 86.4 86.6 86.7 86.9 87.1 87.3 87.5 87.7 87.9 88.1 88.3 88.4 88.6 88.8 89.0 89.2 89.4 89.6 89.8 90.0 90.2 90.3 90.5 90.7 90.9 91.1 91.3 91.5 91.7 91.9 92.0 92.2 92.4 92.6 92.8 93.0 93.2 93.4 93.6 93.8 93.9 94.1 94.3 94.5 94.7 94.9 95.1 95.3 95.5 95.6 95.8 96.0 96.2 96.4 96.6 96.8 97.0 97.2 97.3 97.5 97.7 97.9 98.1 98.3 98.5 98.7 98.9 99.1 99.2 99.4 99.6 99.8 -found 30 predictions from path traversal Error with prediction: snap lend_intergenic: 9657, rend_intergenic: 3511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33994, rend_intergenic: 25524 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54070, rend_intergenic: 42570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64455, rend_intergenic: 56945 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121340, rend_intergenic: 113043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142660, rend_intergenic: 132437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 22224 -exon list size: 12 building trellis 7.1 14.3 21.4 28.6 35.7 42.9 50.0 57.1 64.3 71.4 78.6 85.7 92.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 3534 - 22224 -exon list size: 10 building trellis 8.3 16.7 25.0 33.3 41.7 50.0 58.3 66.7 75.0 83.3 91.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 8123 - 22224 -exon list size: 7 building trellis 11.1 22.2 33.3 44.4 55.6 66.7 77.8 88.9 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support