-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_4718647-4895110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_31590-T1
Valid prediction for snap_scaffold_13-snap.890-T1
Valid prediction for GlimmerHMM_glimmerT_31576-T1
Valid prediction for GlimmerHMM_glimmerT_31587-T1
Valid prediction for GlimmerHMM_glimmerT_31589-T1
Valid prediction for snap_scaffold_13-snap.919-T1
Valid prediction for snap_scaffold_13-snap.913-T1
Valid prediction for GlimmerHMM_glimmerT_31579-T1
Valid prediction for Augustus_model.g21006.t1
Valid prediction for Augustus_model.g21013.t1
Valid prediction for snap_scaffold_13-snap.893-T1
Valid prediction for snap_scaffold_13-snap.895-T1
Valid prediction for GlimmerHMM_glimmerT_31593-T1
Valid prediction for snap_scaffold_13-snap.916-T1
Valid prediction for GlimmerHMM_glimmerT_31599-T1
Valid prediction for snap_scaffold_13-snap.904-T1
Valid prediction for GlimmerHMM_glimmerT_31583-T1
Valid prediction for GlimmerHMM_glimmerT_31596-T1
Valid prediction for Augustus_model.g21009.t1
Valid prediction for GlimmerHMM_glimmerT_31585-T1
Valid prediction for Augustus_model.g21008.t1
Valid prediction for GlimmerHMM_glimmerT_31584-T1
Valid prediction for snap_scaffold_13-snap.922-T1
Valid prediction for snap_scaffold_13-snap.901-T1
Valid prediction for snap_scaffold_13-snap.902-T1
Valid prediction for snap_scaffold_13-snap.899-T1
Valid prediction for snap_scaffold_13-snap.907-T1
Valid prediction for snap_scaffold_13-snap.905-T1
Valid prediction for GlimmerHMM_glimmerT_31573-T1
Valid prediction for snap_scaffold_13-snap.918-T1
Valid prediction for GlimmerHMM_glimmerT_31578-T1
Valid prediction for snap_scaffold_13-snap.892-T1
Valid prediction for snap_scaffold_13-snap.888-T1
Valid prediction for Augustus_model.g21017.t1
Valid prediction for snap_scaffold_13-snap.921-T1
Valid prediction for snap_scaffold_13-snap.923-T1
Valid prediction for snap_scaffold_13-snap.903-T1
Valid prediction for snap_scaffold_13-snap.886-T1
Valid prediction for snap_scaffold_13-snap.910-T1
Valid prediction for snap_scaffold_13-snap.894-T1
Valid prediction for snap_scaffold_13-snap.914-T1
Valid prediction for Augustus_model.g21011.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_31581-T1
Valid prediction for GlimmerHMM_glimmerT_31598-T1
Valid prediction for GlimmerHMM_glimmerT_31586-T1
Valid prediction for snap_scaffold_13-snap.896-T1
Valid prediction for GlimmerHMM_glimmerT_31597-T1
Valid prediction for snap_scaffold_13-snap.925-T1
Valid prediction for snap_scaffold_13-snap.900-T1
Valid prediction for snap_scaffold_13-snap.887-T1
Valid prediction for snap_scaffold_13-snap.924-T1
Valid prediction for GlimmerHMM_glimmerT_31582-T1
Valid prediction for snap_scaffold_13-snap.898-T1
Valid prediction for Augustus_model.g21012.t1
Valid prediction for GlimmerHMM_glimmerT_31594-T1
Valid prediction for GlimmerHMM_glimmerT_31595-T1
Valid prediction for snap_scaffold_13-snap.906-T1
Valid prediction for snap_scaffold_13-snap.917-T1
Valid prediction for Augustus_model.g21018.t1
Valid prediction for snap_scaffold_13-snap.891-T1
Valid prediction for snap_scaffold_13-snap.909-T1
Valid prediction for GlimmerHMM_glimmerT_31580-T1
Valid prediction for GlimmerHMM_glimmerT_31577-T1
Valid prediction for Augustus_model.g21007.t1
Valid prediction for GlimmerHMM_glimmerT_31591-T1
Valid prediction for snap_scaffold_13-snap.915-T1
Valid prediction for snap_scaffold_13-snap.911-T1
Valid prediction for GlimmerHMM_glimmerT_31574-T1
Valid prediction for snap_scaffold_13-snap.912-T1
Valid prediction for GlimmerHMM_glimmerT_31588-T1
Valid prediction for snap_scaffold_13-snap.920-T1
Valid prediction for Augustus_model.g21015.t1
Valid prediction for Augustus_model.g21010.t1
Valid prediction for snap_scaffold_13-snap.908-T1
Valid prediction for GlimmerHMM_glimmerT_31592-T1
Valid prediction for snap_scaffold_13-snap.897-T1
Valid prediction for Augustus_model.g21014.t1
Valid prediction for Augustus_model.g21016.t1
Valid prediction for snap_scaffold_13-snap.889-T1
Valid prediction for GlimmerHMM_glimmerT_31575-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3743, rend_intergenic: 2840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28371, rend_intergenic: 25212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118574, rend_intergenic: 111392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141911, rend_intergenic: 125526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149485, rend_intergenic: 145780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155031, rend_intergenic: 149625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158293, rend_intergenic: 155230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161646, rend_intergenic: 158530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176464
-exon list size: 290


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.7    
3.1    
3.4    
3.8    
4.1    
4.5    
4.8    
5.1    
5.5    
5.8    
6.2    
6.5    
6.8    
7.2    
7.5    
7.9    
8.2    
8.6    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.6    
12.0    
12.3    
12.7    
13.0    
13.4    
13.7    
14.0    
14.4    
14.7    
15.1    
15.4    
15.8    
16.1    
16.4    
16.8    
17.1    
17.5    
17.8    
18.2    
18.5    
18.8    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.2    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.7    
38.0    
38.4    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.4    
41.8    
42.1    
42.5    
42.8    
43.2    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.5    
45.9    
46.2    
46.6    
46.9    
47.3    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.7    
53.1    
53.4    
53.8    
54.1    
54.5    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.8    
57.2    
57.5    
57.9    
58.2    
58.6    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.6    
62.0    
62.3    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.8    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.2    
81.5    
81.8    
82.2    
82.5    
82.9    
83.2    
83.6    
83.9    
84.2    
84.6    
84.9    
85.3    
85.6    
86.0    
86.3    
86.6    
87.0    
87.3    
87.7    
88.0    
88.4    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.4    
91.8    
92.1    
92.5    
92.8    
93.2    
93.5    
93.8    
94.2    
94.5    
94.9    
95.2    
95.5    
95.9    
96.2    
96.6    
96.9    
97.3    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 3743, rend_intergenic: 2840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28371, rend_intergenic: 25212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118574, rend_intergenic: 111392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141911, rend_intergenic: 125526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149485, rend_intergenic: 145780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155031, rend_intergenic: 149625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158293, rend_intergenic: 155230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161646, rend_intergenic: 158530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support