-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_2080304-2220110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_31188-T1
Valid prediction for GlimmerHMM_glimmerT_31185-T1
Valid prediction for GlimmerHMM_glimmerT_31193-T1
Valid prediction for snap_scaffold_13-snap.417-T1
Valid prediction for GlimmerHMM_glimmerT_31173-T1
Valid prediction for GlimmerHMM_glimmerT_31189-T1
Valid prediction for snap_scaffold_13-snap.394-T1
Valid prediction for snap_scaffold_13-snap.409-T1
Valid prediction for GlimmerHMM_glimmerT_31182-T1
Valid prediction for GlimmerHMM_glimmerT_31191-T1
Valid prediction for GlimmerHMM_glimmerT_31187-T1
Valid prediction for snap_scaffold_13-snap.423-T1
Valid prediction for Augustus_model.g20708.t1
Valid prediction for GlimmerHMM_glimmerT_31192-T1
Valid prediction for snap_scaffold_13-snap.414-T1
Valid prediction for GlimmerHMM_glimmerT_31180-T1
Valid prediction for snap_scaffold_13-snap.399-T1
Valid prediction for Augustus_model.g20707.t1
Valid prediction for GlimmerHMM_glimmerT_31181-T1
Valid prediction for GlimmerHMM_glimmerT_31178-T1
Valid prediction for GlimmerHMM_glimmerT_31183-T1
Valid prediction for snap_scaffold_13-snap.395-T1
Valid prediction for snap_scaffold_13-snap.418-T1
Valid prediction for snap_scaffold_13-snap.405-T1
Valid prediction for snap_scaffold_13-snap.397-T1
Valid prediction for GlimmerHMM_glimmerT_31179-T1
Valid prediction for snap_scaffold_13-snap.407-T1
Valid prediction for GlimmerHMM_glimmerT_31174-T1
Valid prediction for snap_scaffold_13-snap.413-T1
Valid prediction for snap_scaffold_13-snap.416-T1
Valid prediction for GlimmerHMM_glimmerT_31194-T1
Valid prediction for snap_scaffold_13-snap.402-T1
Valid prediction for snap_scaffold_13-snap.398-T1
Valid prediction for snap_scaffold_13-snap.421-T1
Valid prediction for snap_scaffold_13-snap.400-T1
Valid prediction for GlimmerHMM_glimmerT_31177-T1
Valid prediction for snap_scaffold_13-snap.420-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_31184-T1
Valid prediction for GlimmerHMM_glimmerT_31176-T1
Valid prediction for GlimmerHMM_glimmerT_31190-T1
Valid prediction for Augustus_model.g20713.t1
Valid prediction for snap_scaffold_13-snap.408-T1
Valid prediction for Augustus_model.g20710.t1
Valid prediction for snap_scaffold_13-snap.415-T1
Valid prediction for snap_scaffold_13-snap.392-T1
Valid prediction for snap_scaffold_13-snap.411-T1
Valid prediction for snap_scaffold_13-snap.422-T1
Valid prediction for GlimmerHMM_glimmerT_31186-T1
Valid prediction for GlimmerHMM_glimmerT_31175-T1
Valid prediction for Augustus_model.g20706.t1
Valid prediction for Augustus_model.g20705.t1
Valid prediction for snap_scaffold_13-snap.412-T1
Valid prediction for snap_scaffold_13-snap.396-T1
Valid prediction for Augustus_model.g20712.t1
Valid prediction for snap_scaffold_13-snap.401-T1
Valid prediction for Augustus_model.g20711.t1
Valid prediction for snap_scaffold_13-snap.404-T1
Valid prediction for snap_scaffold_13-snap.403-T1
Valid prediction for snap_scaffold_13-snap.406-T1
Valid prediction for snap_scaffold_13-snap.410-T1
Valid prediction for snap_scaffold_13-snap.393-T1
Valid prediction for Augustus_model.g20709.t1
Valid prediction for snap_scaffold_13-snap.419-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 57314, rend_intergenic: 52158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62961, rend_intergenic: 57333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77881, rend_intergenic: 75949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84798, rend_intergenic: 84454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94074, rend_intergenic: 86862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125092, rend_intergenic: 121557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134791, rend_intergenic: 131004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139807
-exon list size: 187


building trellis

0.5    
1.1    
1.6    
2.1    
2.6    
3.2    
3.7    
4.2    
4.8    
5.3    
5.8    
6.3    
6.9    
7.4    
7.9    
8.5    
9.0    
9.5    
10.1    
10.6    
11.1    
11.6    
12.2    
12.7    
13.2    
13.8    
14.3    
14.8    
15.3    
15.9    
16.4    
16.9    
17.5    
18.0    
18.5    
19.0    
19.6    
20.1    
20.6    
21.2    
21.7    
22.2    
22.8    
23.3    
23.8    
24.3    
24.9    
25.4    
25.9    
26.5    
27.0    
27.5    
28.0    
28.6    
29.1    
29.6    
30.2    
30.7    
31.2    
31.7    
32.3    
32.8    
33.3    
33.9    
34.4    
34.9    
35.4    
36.0    
36.5    
37.0    
37.6    
38.1    
38.6    
39.2    
39.7    
40.2    
40.7    
41.3    
41.8    
42.3    
42.9    
43.4    
43.9    
44.4    
45.0    
45.5    
46.0    
46.6    
47.1    
47.6    
48.1    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.9    
52.4    
52.9    
53.4    
54.0    
54.5    
55.0    
55.6    
56.1    
56.6    
57.1    
57.7    
58.2    
58.7    
59.3    
59.8    
60.3    
60.8    
61.4    
61.9    
62.4    
63.0    
63.5    
64.0    
64.6    
65.1    
65.6    
66.1    
66.7    
67.2    
67.7    
68.3    
68.8    
69.3    
69.8    
70.4    
70.9    
71.4    
72.0    
72.5    
73.0    
73.5    
74.1    
74.6    
75.1    
75.7    
76.2    
76.7    
77.2    
77.8    
78.3    
78.8    
79.4    
79.9    
80.4    
81.0    
81.5    
82.0    
82.5    
83.1    
83.6    
84.1    
84.7    
85.2    
85.7    
86.2    
86.8    
87.3    
87.8    
88.4    
88.9    
89.4    
89.9    
90.5    
91.0    
91.5    
92.1    
92.6    
93.1    
93.7    
94.2    
94.7    
95.2    
95.8    
96.3    
96.8    
97.4    
97.9    
98.4    
98.9    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 57314, rend_intergenic: 52158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62961, rend_intergenic: 57333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77881, rend_intergenic: 75949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84798, rend_intergenic: 84454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94074, rend_intergenic: 86862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125092, rend_intergenic: 121557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134791, rend_intergenic: 131004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support