-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_16433698-16527564

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g22072.t1
Valid prediction for snap_scaffold_13-snap.3249-T1
Valid prediction for Augustus_model.g22075.t1
Couldn't classify 93702, 93863
Sorry, prediction GlimmerHMM_glimmerT_33081-T1 fails validation.
(ATG)	 TC	92734-93468	GT	AGG
(GCT)	 AG	93702-93863	GT	GGG
-recovered GlimmerHMM_glimmerT_33081-T1, initial, 92734, 93468
-recovered GlimmerHMM_glimmerT_33081-T1, internal, 93702, 93863
Valid prediction for snap_scaffold_13-snap.3241-T1
Couldn't classify 93702, 93863
Sorry, prediction snap_scaffold_13-snap.3263-T1 fails validation.
(ATG)	 TC	92734-93468	GT	AGG
(GCT)	 AG	93702-93863	GT	GGG
-recovered snap_scaffold_13-snap.3263-T1, initial, 92734, 93468
-recovered snap_scaffold_13-snap.3263-T1, internal, 93702, 93863
Valid prediction for GlimmerHMM_glimmerT_33077-T1
Valid prediction for snap_scaffold_13-snap.3262-T1
Valid prediction for GlimmerHMM_glimmerT_33079-T1
Valid prediction for HiQ_model.g22069.t1
Valid prediction for snap_scaffold_13-snap.3252-T1
Valid prediction for pasa_asmbl_11577.p1
Valid prediction for GlimmerHMM_glimmerT_33075-T1
Valid prediction for snap_scaffold_13-snap.3245-T1
Valid prediction for snap_scaffold_13-snap.3242-T1
Valid prediction for snap_scaffold_13-snap.3256-T1
Valid prediction for snap_scaffold_13-snap.3258-T1
Valid prediction for GlimmerHMM_glimmerT_33074-T1
Valid prediction for GlimmerHMM_glimmerT_33068-T1
Valid prediction for GlimmerHMM_glimmerT_33067-T1
Valid prediction for snap_scaffold_13-snap.3254-T1
Valid prediction for snap_scaffold_13-snap.3260-T1
Valid prediction for snap_scaffold_13-snap.3248-T1
Valid prediction for GlimmerHMM_glimmerT_33073-T1
Valid prediction for Augustus_model.g22073.t1
Couldn't classify 85078, 85272
Sorry, prediction pasa_asmbl_11585.p1 fails validation.
(GTG)	 GG	85078-85272	GT	GAG
(CCT)	 AG	85377-85585	GT	CTG
(GAT)	 AG	86339-86507	GT	GGG
(GAG)	 AG	86813-86863	GT	ATG
(GAT)	 AG	87543-87647	AG	GAA
-recovered pasa_asmbl_11585.p1, terminal, 87543, 87647
-recovered pasa_asmbl_11585.p1, internal, 85377, 85585
-recovered pasa_asmbl_11585.p1, internal, 86339, 86507
-recovered pasa_asmbl_11585.p1, internal, 86813, 86863
Valid prediction for Augustus_model.g22074.t1
Valid prediction for GlimmerHMM_glimmerT_33080-T1
Valid prediction for CodingQuarry_transcript_13367-T1
Valid prediction for snap_scaffold_13-snap.3246-T1
Valid prediction for GlimmerHMM_glimmerT_33078-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33076-T1
Valid prediction for snap_scaffold_13-snap.3250-T1
Valid prediction for GlimmerHMM_glimmerT_33072-T1
Valid prediction for GlimmerHMM_glimmerT_33070-T1
Valid prediction for Augustus_model.g22068.t1
Valid prediction for snap_scaffold_13-snap.3243-T1
Valid prediction for CodingQuarry_transcript_13368-T1
Valid prediction for GlimmerHMM_glimmerT_33071-T1
Valid prediction for snap_scaffold_13-snap.3257-T1
Valid prediction for snap_scaffold_13-snap.3253-T1
Valid prediction for snap_scaffold_13-snap.3255-T1
Valid prediction for HiQ_model.g22071.t1
Valid prediction for snap_scaffold_13-snap.3247-T1
Valid prediction for GlimmerHMM_glimmerT_33069-T1
Valid prediction for snap_scaffold_13-snap.3251-T1
Valid prediction for snap_scaffold_13-snap.3261-T1
Valid prediction for snap_scaffold_13-snap.3259-T1
Valid prediction for snap_scaffold_13-snap.3244-T1
Valid prediction for HiQ_model.g22070.t1
Valid prediction for pasa_asmbl_10374.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25415, rend_intergenic: 9088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40906, rend_intergenic: 34283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44318, rend_intergenic: 41171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46400, rend_intergenic: 45735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64378, rend_intergenic: 47824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70109, rend_intergenic: 67352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82312, rend_intergenic: 78591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84722, rend_intergenic: 84169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87647, rend_intergenic: 85032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 93867
-exon list size: 159


building trellis

0.6    
1.2    
1.9    
2.5    
3.1    
3.7    
4.3    
5.0    
5.6    
6.2    
6.8    
7.5    
8.1    
8.7    
9.3    
9.9    
10.6    
11.2    
11.8    
12.4    
13.0    
13.7    
14.3    
14.9    
15.5    
16.1    
16.8    
17.4    
18.0    
18.6    
19.3    
19.9    
20.5    
21.1    
21.7    
22.4    
23.0    
23.6    
24.2    
24.8    
25.5    
26.1    
26.7    
27.3    
28.0    
28.6    
29.2    
29.8    
30.4    
31.1    
31.7    
32.3    
32.9    
33.5    
34.2    
34.8    
35.4    
36.0    
36.6    
37.3    
37.9    
38.5    
39.1    
39.8    
40.4    
41.0    
41.6    
42.2    
42.9    
43.5    
44.1    
44.7    
45.3    
46.0    
46.6    
47.2    
47.8    
48.4    
49.1    
49.7    
50.3    
50.9    
51.6    
52.2    
52.8    
53.4    
54.0    
54.7    
55.3    
55.9    
56.5    
57.1    
57.8    
58.4    
59.0    
59.6    
60.2    
60.9    
61.5    
62.1    
62.7    
63.4    
64.0    
64.6    
65.2    
65.8    
66.5    
67.1    
67.7    
68.3    
68.9    
69.6    
70.2    
70.8    
71.4    
72.0    
72.7    
73.3    
73.9    
74.5    
75.2    
75.8    
76.4    
77.0    
77.6    
78.3    
78.9    
79.5    
80.1    
80.7    
81.4    
82.0    
82.6    
83.2    
83.9    
84.5    
85.1    
85.7    
86.3    
87.0    
87.6    
88.2    
88.8    
89.4    
90.1    
90.7    
91.3    
91.9    
92.5    
93.2    
93.8    
94.4    
95.0    
95.7    
96.3    
96.9    
97.5    
98.1    
98.8    
99.4    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 25415, rend_intergenic: 9088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40906, rend_intergenic: 34283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44318, rend_intergenic: 41171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46400, rend_intergenic: 45735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64378, rend_intergenic: 47824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70109, rend_intergenic: 67352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82312, rend_intergenic: 78591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84722, rend_intergenic: 84169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87647, rend_intergenic: 85032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support