-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_15590671-15815654

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.3073-T1
Valid prediction for snap_scaffold_13-snap.3068-T1
Valid prediction for snap_scaffold_13-snap.3042-T1
Valid prediction for snap_scaffold_13-snap.3078-T1
Valid prediction for snap_scaffold_13-snap.3058-T1
Valid prediction for snap_scaffold_13-snap.3072-T1
Valid prediction for GlimmerHMM_glimmerT_32942-T1
Valid prediction for GlimmerHMM_glimmerT_32947-T1
Valid prediction for Augustus_model.g21982.t1
Valid prediction for snap_scaffold_13-snap.3076-T1
Valid prediction for snap_scaffold_13-snap.3052-T1
Valid prediction for GlimmerHMM_glimmerT_32939-T1
Valid prediction for Augustus_model.g21993.t1
Valid prediction for GlimmerHMM_glimmerT_32960-T1
Valid prediction for GlimmerHMM_glimmerT_32961-T1
Valid prediction for snap_scaffold_13-snap.3046-T1
Couldn't classify 159270, 159358
Sorry, prediction CodingQuarry_transcript_13342-T1 fails validation.
(ATG)	 TC	158212-158603	GT	CTG
(GAC)	 CA	159270-159358	GT	AGG
(GGG)	 AG	159476-159849	GT	AGG
(GTA)	 AG	159957-160286	GT	AGG
(CAT)	 AG	160635-161088	GT	AGG
(CTA)	 AG	161389-161422	GT	AGG
(AGT)	 AG	161850-161862	TA	AAT
-recovered CodingQuarry_transcript_13342-T1, initial, 158212, 158603
-recovered CodingQuarry_transcript_13342-T1, terminal, 161850, 161862
-recovered CodingQuarry_transcript_13342-T1, internal, 159476, 159849
-recovered CodingQuarry_transcript_13342-T1, internal, 159957, 160286
-recovered CodingQuarry_transcript_13342-T1, internal, 160635, 161088
-recovered CodingQuarry_transcript_13342-T1, internal, 161389, 161422
Valid prediction for GlimmerHMM_glimmerT_32941-T1
Valid prediction for GlimmerHMM_glimmerT_32959-T1
Valid prediction for Augustus_model.g21991.t1
Valid prediction for GlimmerHMM_glimmerT_32943-T1
Valid prediction for snap_scaffold_13-snap.3069-T1
Valid prediction for snap_scaffold_13-snap.3050-T1
Valid prediction for Augustus_model.g21992.t1
Valid prediction for HiQ_model.g21988.t1
Valid prediction for snap_scaffold_13-snap.3082-T1
Valid prediction for snap_scaffold_13-snap.3063-T1
Valid prediction for snap_scaffold_13-snap.3049-T1
Valid prediction for GlimmerHMM_glimmerT_32951-T1
Valid prediction for HiQ_model.g21976.t1
Valid prediction for HiQ_model.g21974.t1
Valid prediction for snap_scaffold_13-snap.3048-T1
Valid prediction for CodingQuarry_transcript_13341-T1
Valid prediction for CodingQuarry_transcript_13338-T1
Valid prediction for snap_scaffold_13-snap.3040-T1
Couldn't classify 190052, 190075
Couldn't classify 191354, 191416
Sorry, prediction pasa_asmbl_11540.p1 fails validation.
(GAC)	 AT	190052-190075	GT	AGG
(AGC)	 AG	190535-190654	GT	AGG
(GTG)	 AG	190849-190941	GT	TGG
(TCA)	 AG	191354-191416	AG	CAA
-recovered pasa_asmbl_11540.p1, internal, 190535, 190654
-recovered pasa_asmbl_11540.p1, internal, 190849, 190941
Valid prediction for snap_scaffold_13-snap.3053-T1
Valid prediction for snap_scaffold_13-snap.3060-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_32958-T1
Valid prediction for snap_scaffold_13-snap.3065-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for Augustus_model.g21972.t1
Couldn't classify 78746, 78885
Couldn't classify 79259, 79331
Sorry, prediction pasa_asmbl_11524.p1 fails validation.
(ATG)	 AA	78746-78885	AT	CAA
(AGG)	 AC	79259-79331	GT	AAG
(GAT)	 AG	80159-80335	GT	AGG
(GCT)	 AG	80932-80994	AT	AGA
-recovered pasa_asmbl_11524.p1, terminal, 80932, 80994
-recovered pasa_asmbl_11524.p1, internal, 80159, 80335
Valid prediction for snap_scaffold_13-snap.3083-T1
Valid prediction for snap_scaffold_13-snap.3045-T1
Couldn't classify 114222, 114689
Sorry, prediction pasa_asmbl_11534.p2 fails validation.
(GTC)	 CG	114222-114689	CT	GAC
Valid prediction for snap_scaffold_13-snap.3080-T1
Couldn't classify 49518, 49698
Sorry, prediction pasa_asmbl_11523.p1 fails validation.
(GGG)	 CA	49518-49698	GT	AGG
(AGC)	 AG	50600-50761	GT	AGG
(GCG)	 AG	50865-50932	GC	GAG
-recovered pasa_asmbl_11523.p1, terminal, 50865, 50932
-recovered pasa_asmbl_11523.p1, internal, 50600, 50761
-recovered pasa_asmbl_11523.p1, internal, 50865, 50932
Couldn't classify 78761, 78885
Couldn't classify 79259, 79331
Sorry, prediction CodingQuarry_transcript_13337-T1 fails validation.
(ATG)	 CT	78761-78885	AT	CAA
(AGG)	 AC	79259-79331	GT	AAG
(GAT)	 AG	80159-80335	GT	AGG
(GCT)	 AG	80932-80994	AT	AGA
-recovered CodingQuarry_transcript_13337-T1, terminal, 80932, 80994
-recovered CodingQuarry_transcript_13337-T1, internal, 80159, 80335
Valid prediction for GlimmerHMM_glimmerT_32956-T1
Valid prediction for GlimmerHMM_glimmerT_32948-T1
Valid prediction for snap_scaffold_13-snap.3057-T1
Valid prediction for pasa_asmbl_11535.p1
Valid prediction for snap_scaffold_13-snap.3038-T1
Valid prediction for GlimmerHMM_glimmerT_32950-T1
Valid prediction for snap_scaffold_13-snap.3066-T1
Valid prediction for GlimmerHMM_glimmerT_32962-T1
Valid prediction for snap_scaffold_13-snap.3071-T1
Valid prediction for Augustus_model.g21975.t1
Valid prediction for snap_scaffold_13-snap.3062-T1
Valid prediction for pasa_asmbl_11531.p1
Couldn't classify 42930, 42993
Couldn't classify 45715, 45792
Sorry, prediction pasa_asmbl_11520.p1 fails validation.
(GCG)	 TG	42930-42993	GT	AGG
(GTT)	 AG	43453-43583	GT	AGG
(AGC)	 AG	43913-44068	GT	AGG
(GTC)	 AG	44151-44243	GT	GGG
(CTG)	 AG	44692-44798	GT	AAG
(AAT)	 AG	44926-44962	GT	AGG
(AGC)	 AG	45366-45506	GT	AGG
(GCA)	 AG	45715-45792	GA	CAG
-recovered pasa_asmbl_11520.p1, internal, 43453, 43583
-recovered pasa_asmbl_11520.p1, internal, 43913, 44068
-recovered pasa_asmbl_11520.p1, internal, 44151, 44243
-recovered pasa_asmbl_11520.p1, internal, 44692, 44798
-recovered pasa_asmbl_11520.p1, internal, 44926, 44962
-recovered pasa_asmbl_11520.p1, internal, 45366, 45506
Valid prediction for Augustus_model.g21989.t1
Valid prediction for Augustus_model.g21990.t1
Valid prediction for Augustus_model.g21980.t1
Valid prediction for pasa_asmbl_11539.p1
Valid prediction for snap_scaffold_13-snap.3041-T1
Valid prediction for snap_scaffold_13-snap.3074-T1
Valid prediction for Augustus_model.g21979.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.3077-T1
Valid prediction for snap_scaffold_13-snap.3070-T1
Valid prediction for Augustus_model.g21987.t1
Valid prediction for snap_scaffold_13-snap.3067-T1
Valid prediction for snap_scaffold_13-snap.3064-T1
Valid prediction for snap_scaffold_13-snap.3056-T1
Valid prediction for HiQ_model.g21983.t1
Valid prediction for snap_scaffold_13-snap.3054-T1
Valid prediction for CodingQuarry_transcript_13340-T1
Couldn't classify 182314, 182404
Couldn't classify 184376, 184462
Sorry, prediction pasa_asmbl_10246.p1 fails validation.
(ACT)	 CG	182314-182404	GT	TGG
(AGC)	 AG	182817-182921	GT	CAG
(GTG)	 AG	183015-183079	GT	AGG
(ACC)	 AG	183562-183649	GT	AGG
(AGG)	 AG	183900-184003	GT	AGG
(CAC)	 AG	184376-184462	CA	ACC
-recovered pasa_asmbl_10246.p1, internal, 182817, 182921
-recovered pasa_asmbl_10246.p1, internal, 183015, 183079
-recovered pasa_asmbl_10246.p1, internal, 183562, 183649
-recovered pasa_asmbl_10246.p1, internal, 183900, 184003
Valid prediction for GlimmerHMM_glimmerT_32963-T1
Valid prediction for Augustus_model.g21984.t1
Valid prediction for snap_scaffold_13-snap.3075-T1
Valid prediction for GlimmerHMM_glimmerT_32940-T1
Valid prediction for HiQ_model.g21981.t1
Valid prediction for snap_scaffold_13-snap.3044-T1
Couldn't classify 126883, 126917
Sorry, prediction pasa_asmbl_10248.p1 fails validation.
(CGC)	 CG	126883-126917	GT	ATG
(AAC)	 AG	127907-128003	GT	AGG
(GAG)	 AG	129393-129553	GT	GGG
(GAA)	 AG	129772-129987	GT	AGG
(GCT)	 AG	130662-130934	GT	AGG
(GTA)	 AG	131229-131400	GT	CCG
(GTC)	 AG	131935-132045	CC	GAC
-recovered pasa_asmbl_10248.p1, terminal, 131935, 132045
-recovered pasa_asmbl_10248.p1, internal, 127907, 128003
-recovered pasa_asmbl_10248.p1, internal, 129393, 129553
-recovered pasa_asmbl_10248.p1, internal, 129772, 129987
-recovered pasa_asmbl_10248.p1, internal, 130662, 130934
-recovered pasa_asmbl_10248.p1, internal, 131229, 131400
Couldn't classify 185078, 185125
Couldn't classify 189079, 189150
Sorry, prediction pasa_asmbl_10245.p1 fails validation.
(TTT)	 AG	185078-185125	GT	AGG
(AGC)	 AG	186782-186869	GT	CGG
(CCA)	 AG	187093-187230	GT	GGG
(GTG)	 AG	187493-187587	GT	AGG
(TTG)	 AG	187963-188160	GT	GGG
(GAG)	 AG	189079-189150	AG	AGA
-recovered pasa_asmbl_10245.p1, internal, 185078, 185125
-recovered pasa_asmbl_10245.p1, internal, 186782, 186869
-recovered pasa_asmbl_10245.p1, internal, 187093, 187230
-recovered pasa_asmbl_10245.p1, internal, 187493, 187587
-recovered pasa_asmbl_10245.p1, internal, 187963, 188160
Valid prediction for Augustus_model.g21986.t1
Valid prediction for GlimmerHMM_glimmerT_32945-T1
Valid prediction for Augustus_model.g21973.t1
Couldn't classify 80358, 80443
Sorry, prediction pasa_asmbl_10253.p1 fails validation.
(ATG)	 GG	78482-78652	GT	TGG
(GAG)	 AG	79135-79204	GT	AGG
(AGG)	 AG	79528-79676	GT	TGG
(ATC)	 AG	79992-80226	GT	AGG
(AAC)	 AG	80358-80443	GT	AGG
-recovered pasa_asmbl_10253.p1, initial, 78482, 78652
-recovered pasa_asmbl_10253.p1, internal, 79135, 79204
-recovered pasa_asmbl_10253.p1, internal, 79528, 79676
-recovered pasa_asmbl_10253.p1, internal, 79992, 80226
-recovered pasa_asmbl_10253.p1, internal, 80358, 80443
Valid prediction for snap_scaffold_13-snap.3079-T1
Valid prediction for Augustus_model.g21977.t1
Valid prediction for GlimmerHMM_glimmerT_32957-T1
Valid prediction for snap_scaffold_13-snap.3059-T1
Valid prediction for GlimmerHMM_glimmerT_32953-T1
Valid prediction for GlimmerHMM_glimmerT_32946-T1
Valid prediction for snap_scaffold_13-snap.3039-T1
Valid prediction for HiQ_model.g21985.t1
Valid prediction for GlimmerHMM_glimmerT_32952-T1
Couldn't classify 193377, 193496
Sorry, prediction pasa_asmbl_10310.p1 fails validation.
(ATG)	 AG	191672-191761	GT	AGG
(GTG)	 AG	192375-192509	GT	AGG
(CTG)	 AG	193377-193496	GC	ACG
-recovered pasa_asmbl_10310.p1, initial, 191672, 191761
-recovered pasa_asmbl_10310.p1, internal, 191672, 191761
-recovered pasa_asmbl_10310.p1, internal, 192375, 192509
-recovered pasa_asmbl_10310.p1, internal, 193377, 193496
Valid prediction for snap_scaffold_13-snap.3055-T1
Valid prediction for snap_scaffold_13-snap.3043-T1
Couldn't classify 80765, 80789
Sorry, prediction pasa_asmbl_10380.p2 fails validation.
(GAG)	 TC	80765-80789	GT	AGG
(AGA)	 AG	81332-81477	GT	TGG
(CCC)	 AG	81731-81814	GT	AGG
(GTG)	 AG	83137-83243	GT	AAG
(GTG)	 AG	84197-84248	GG	GAG
-recovered pasa_asmbl_10380.p2, terminal, 84197, 84248
-recovered pasa_asmbl_10380.p2, internal, 81332, 81477
-recovered pasa_asmbl_10380.p2, internal, 81731, 81814
-recovered pasa_asmbl_10380.p2, internal, 83137, 83243
Couldn't classify 198852, 199001
Couldn't classify 201871, 201942
Sorry, prediction pasa_asmbl_10417.p1 fails validation.
(AGG)	 TC	198852-199001	GT	AGG
(ACC)	 AG	199251-199388	GT	AGG
(GTG)	 AG	199786-199917	GT	AGG
(CAA)	 AG	200097-200227	GT	AGG
(GTC)	 AG	200370-200580	GT	AGG
(ATG)	 AG	201014-201382	GT	AGG
(GAC)	 AG	201550-201690	GT	AGG
(TCT)	 AG	201871-201942	CA	ACC
-recovered pasa_asmbl_10417.p1, initial, 201014, 201382
-recovered pasa_asmbl_10417.p1, internal, 199251, 199388
-recovered pasa_asmbl_10417.p1, internal, 199786, 199917
-recovered pasa_asmbl_10417.p1, internal, 200097, 200227
-recovered pasa_asmbl_10417.p1, internal, 200370, 200580
-recovered pasa_asmbl_10417.p1, internal, 201014, 201382
-recovered pasa_asmbl_10417.p1, internal, 201550, 201690
Valid prediction for GlimmerHMM_glimmerT_32955-T1
Valid prediction for snap_scaffold_13-snap.3047-T1
Valid prediction for snap_scaffold_13-snap.3051-T1
Valid prediction for GlimmerHMM_glimmerT_32944-T1
Valid prediction for Augustus_model.g21978.t1
Valid prediction for GlimmerHMM_glimmerT_32949-T1
Valid prediction for snap_scaffold_13-snap.3061-T1
Valid prediction for GlimmerHMM_glimmerT_32954-T1
Valid prediction for snap_scaffold_13-snap.3081-T1
Valid prediction for snap_scaffold_13-snap.3037-T1
Valid prediction for CodingQuarry_transcript_13339-T1
Couldn't classify 99464, 99548
Couldn't classify 101467, 101591
Couldn't classify 101896, 101994
Sorry, prediction pasa_asmbl_10249.p1 fails validation.
(GAG)	 GA	99464-99548	GT	AGG
(TCC)	 AG	99732-99787	GT	AGG
(CTG)	 AG	100537-100678	GT	TGG
(AGA)	 AG	100907-101006	GT	AGG
(CTT)	 AG	101467-101591	AT	TTA
(GTG)	 AC	101896-101994	GT	AGG
(TCT)	 AG	102373-102551	GT	TGG
(GCG)	 AG	103064-103226	GT	AGG
(ATG)	 AG	103876-103976	GT	AGG
(CTG)	 AG	104421-104529	GT	AGG
(GTA)	 AG	104850-104962	GT	TTG
(GAC)	 AG	105181-105346	GT	AGG
(GCT)	 AG	105558-105683	GT	CGG
(CCC)	 AG	106716-106814	GT	GCG
(AGG)	 AG	107019-107104	GT	CCG
(GAG)	 AG	107457-107613	GT	TGG
(ATG)	 AG	108066-108144	GT	GGG
(TGA)	 AG	108523-108631	AC	GAA
add_exon() Sorry, pasa_asmbl_10249.p1 103876-103976-initial-1 is invalid.
-recovered pasa_asmbl_10249.p1, initial, 103876, 103976
-recovered pasa_asmbl_10249.p1, initial, 108066, 108144
add_exon() Sorry, pasa_asmbl_10249.p1 103064-103226-terminal-3 is invalid.
-recovered pasa_asmbl_10249.p1, terminal, 103064, 103226
-recovered pasa_asmbl_10249.p1, terminal, 108523, 108631
-recovered pasa_asmbl_10249.p1, internal, 99732, 99787
-recovered pasa_asmbl_10249.p1, internal, 100537, 100678
-recovered pasa_asmbl_10249.p1, internal, 100907, 101006
-recovered pasa_asmbl_10249.p1, internal, 102373, 102551
-recovered pasa_asmbl_10249.p1, internal, 103064, 103226
-recovered pasa_asmbl_10249.p1, internal, 103876, 103976
-recovered pasa_asmbl_10249.p1, internal, 104421, 104529
-recovered pasa_asmbl_10249.p1, internal, 104850, 104962
-recovered pasa_asmbl_10249.p1, internal, 105181, 105346
-recovered pasa_asmbl_10249.p1, internal, 105558, 105683
-recovered pasa_asmbl_10249.p1, internal, 106716, 106814
-recovered pasa_asmbl_10249.p1, internal, 107019, 107104
-recovered pasa_asmbl_10249.p1, internal, 107457, 107613
-recovered pasa_asmbl_10249.p1, internal, 108066, 108144

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 11110, rend_intergenic: 11107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 3155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11506, rend_intergenic: 11107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42731, rend_intergenic: 11918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50932, rend_intergenic: 44102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55291, rend_intergenic: 51163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70369, rend_intergenic: 61325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90345, rend_intergenic: 79601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97068, rend_intergenic: 91565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114689, rend_intergenic: 99583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123051, rend_intergenic: 120024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125888, rend_intergenic: 123329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136047, rend_intergenic: 127567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142950, rend_intergenic: 138877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148143, rend_intergenic: 143429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152265, rend_intergenic: 149434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179654, rend_intergenic: 167466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183290, rend_intergenic: 179770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198454, rend_intergenic: 187971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211800, rend_intergenic: 204997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216018, rend_intergenic: 211935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218498, rend_intergenic: 216069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 224984
-exon list size: 564


building trellis

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18.7    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
20.0    
20.1    
20.3    
20.5    
20.7    
20.8    
21.0    
21.2    
21.4    
21.6    
21.7    
21.9    
22.1    
22.3    
22.4    
22.6    
22.8    
23.0    
23.1    
23.3    
23.5    
23.7    
23.9    
24.0    
24.2    
24.4    
24.6    
24.7    
24.9    
25.1    
25.3    
25.4    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.9    
27.0    
27.2    
27.4    
27.6    
27.7    
27.9    
28.1    
28.3    
28.4    
28.6    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.9    
30.0    
30.2    
30.4    
30.6    
30.7    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
32.0    
32.2    
32.3    
32.5    
32.7    
32.9    
33.0    
33.2    
33.4    
33.6    
33.7    
33.9    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.2    
35.3    
35.5    
35.7    
35.9    
36.0    
36.2    
36.4    
36.6    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.9    
39.0    
39.2    
39.4    
39.6    
39.8    
39.9    
40.1    
40.3    
40.5    
40.6    
40.8    
41.0    
41.2    
41.3    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.6    
42.8    
42.9    
43.1    
43.3    
43.5    
43.6    
43.8    
44.0    
44.2    
44.3    
44.5    
44.7    
44.9    
45.1    
45.2    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.6    
49.8    
50.0    
50.2    
50.4    
50.5    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.8    
54.9    
55.1    
55.3    
55.5    
55.7    
55.8    
56.0    
56.2    
56.4    
56.5    
56.7    
56.9    
57.1    
57.2    
57.4    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.4    
59.5    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
64.0    
64.1    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.1    
66.3    
66.4    
66.6    
66.8    
67.0    
67.1    
67.3    
67.5    
67.7    
67.8    
68.0    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.3    
69.4    
69.6    
69.8    
70.0    
70.1    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.4    
71.6    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
73.0    
73.1    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.7    
74.9    
75.1    
75.3    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.9    
77.0    
77.2    
77.4    
77.6    
77.7    
77.9    
78.1    
78.3    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.3    
81.4    
81.6    
81.8    
82.0    
82.2    
82.3    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.6    
83.7    
83.9    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.9    
86.0    
86.2    
86.4    
86.6    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.5    
90.6    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.8    
92.9    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.1    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 28 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 11110, rend_intergenic: 11107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 3155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11506, rend_intergenic: 11107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42731, rend_intergenic: 11918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50932, rend_intergenic: 44102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55291, rend_intergenic: 51163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70369, rend_intergenic: 61325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90345, rend_intergenic: 79601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97068, rend_intergenic: 91565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114689, rend_intergenic: 99583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123051, rend_intergenic: 120024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125888, rend_intergenic: 123329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136047, rend_intergenic: 127567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142950, rend_intergenic: 138877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148143, rend_intergenic: 143429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152265, rend_intergenic: 149434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179654, rend_intergenic: 167466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183290, rend_intergenic: 179770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198454, rend_intergenic: 187971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211800, rend_intergenic: 204997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216018, rend_intergenic: 211935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218498, rend_intergenic: 216069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support