-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_13/scaffold_13_13000895-13133760

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_32593-T1
Valid prediction for GlimmerHMM_glimmerT_32591-T1
Valid prediction for GlimmerHMM_glimmerT_32604-T1
Valid prediction for Augustus_model.g21766.t1
Valid prediction for snap_scaffold_13-snap.2483-T1
Valid prediction for Augustus_model.g21769.t1
Couldn't classify 115194, 115538
Sorry, prediction pasa_asmbl_11367.p2 fails validation.
(ACA)	 AG	115194-115538	AG	CCA
Valid prediction for snap_scaffold_13-snap.2460-T1
Valid prediction for GlimmerHMM_glimmerT_32602-T1
Valid prediction for Augustus_model.g21775.t1
Valid prediction for snap_scaffold_13-snap.2485-T1
Valid prediction for Augustus_model.g21771.t1
Valid prediction for GlimmerHMM_glimmerT_32597-T1
Valid prediction for snap_scaffold_13-snap.2494-T1
Valid prediction for GlimmerHMM_glimmerT_32607-T1
Valid prediction for snap_scaffold_13-snap.2486-T1
Valid prediction for GlimmerHMM_glimmerT_32603-T1
Valid prediction for snap_scaffold_13-snap.2493-T1
Valid prediction for snap_scaffold_13-snap.2469-T1
Valid prediction for GlimmerHMM_glimmerT_32589-T1
Valid prediction for snap_scaffold_13-snap.2474-T1
Valid prediction for Augustus_model.g21772.t1
Valid prediction for GlimmerHMM_glimmerT_32592-T1
Couldn't classify 119844, 120242
Sorry, prediction pasa_asmbl_11587.p2 fails validation.
(CCC)	 CT	119844-120242	GG	GAG
Couldn't classify 15815, 15952
Couldn't classify 16211, 16381
Sorry, prediction pasa_asmbl_11363.p1 fails validation.
(CTG)	 TC	15815-15952	GT	AGG
(GAT)	 AG	16211-16381	GT	AGG
-recovered pasa_asmbl_11363.p1, internal, 16211, 16381
Valid prediction for snap_scaffold_13-snap.2465-T1
Valid prediction for snap_scaffold_13-snap.2492-T1
Valid prediction for snap_scaffold_13-snap.2467-T1
Valid prediction for Augustus_model.g21770.t1
Valid prediction for snap_scaffold_13-snap.2471-T1
Valid prediction for GlimmerHMM_glimmerT_32590-T1
Valid prediction for snap_scaffold_13-snap.2490-T1
Valid prediction for GlimmerHMM_glimmerT_32598-T1
Valid prediction for GlimmerHMM_glimmerT_32600-T1
Valid prediction for snap_scaffold_13-snap.2472-T1
Valid prediction for Augustus_model.g21774.t1
Valid prediction for Augustus_model.g21767.t1
Valid prediction for snap_scaffold_13-snap.2480-T1
Valid prediction for GlimmerHMM_glimmerT_32595-T1
Valid prediction for Augustus_model.g21768.t1
Valid prediction for snap_scaffold_13-snap.2463-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.2481-T1
Valid prediction for GlimmerHMM_glimmerT_32601-T1
Valid prediction for snap_scaffold_13-snap.2478-T1
Valid prediction for snap_scaffold_13-snap.2475-T1
Valid prediction for GlimmerHMM_glimmerT_32605-T1
Valid prediction for snap_scaffold_13-snap.2473-T1
Valid prediction for GlimmerHMM_glimmerT_32596-T1
Valid prediction for snap_scaffold_13-snap.2466-T1
Valid prediction for snap_scaffold_13-snap.2468-T1
Valid prediction for GlimmerHMM_glimmerT_32594-T1
Valid prediction for snap_scaffold_13-snap.2459-T1
Valid prediction for snap_scaffold_13-snap.2487-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_13-snap.2458-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g21773.t1
Valid prediction for snap_scaffold_13-snap.2488-T1
Valid prediction for GlimmerHMM_glimmerT_32606-T1
Valid prediction for snap_scaffold_13-snap.2479-T1
Valid prediction for snap_scaffold_13-snap.2462-T1
Valid prediction for GlimmerHMM_glimmerT_32599-T1
Valid prediction for snap_scaffold_13-snap.2457-T1
Valid prediction for snap_scaffold_13-snap.2484-T1
Valid prediction for snap_scaffold_13-snap.2476-T1
Valid prediction for snap_scaffold_13-snap.2464-T1
Valid prediction for snap_scaffold_13-snap.2489-T1
Valid prediction for snap_scaffold_13-snap.2461-T1
Valid prediction for snap_scaffold_13-snap.2477-T1
Valid prediction for snap_scaffold_13-snap.2470-T1
Valid prediction for snap_scaffold_13-snap.2482-T1
Valid prediction for snap_scaffold_13-snap.2491-T1
Sorry, intron length (8) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24467, rend_intergenic: 19937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30321, rend_intergenic: 29464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39791, rend_intergenic: 31178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45402, rend_intergenic: 42419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52578, rend_intergenic: 45613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55856, rend_intergenic: 54028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66361, rend_intergenic: 58554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78524, rend_intergenic: 68978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88664, rend_intergenic: 87105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96971, rend_intergenic: 89008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100092, rend_intergenic: 97385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113919, rend_intergenic: 105630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118074, rend_intergenic: 115248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120242, rend_intergenic: 119559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121905, rend_intergenic: 120246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 132866
-exon list size: 217


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.7    
3.2    
3.7    
4.1    
4.6    
5.0    
5.5    
5.9    
6.4    
6.8    
7.3    
7.8    
8.2    
8.7    
9.1    
9.6    
10.0    
10.5    
11.0    
11.4    
11.9    
12.3    
12.8    
13.2    
13.7    
14.2    
14.6    
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15.5    
16.0    
16.4    
16.9    
17.4    
17.8    
18.3    
18.7    
19.2    
19.6    
20.1    
20.5    
21.0    
21.5    
21.9    
22.4    
22.8    
23.3    
23.7    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
26.9    
27.4    
27.9    
28.3    
28.8    
29.2    
29.7    
30.1    
30.6    
31.1    
31.5    
32.0    
32.4    
32.9    
33.3    
33.8    
34.2    
34.7    
35.2    
35.6    
36.1    
36.5    
37.0    
37.4    
37.9    
38.4    
38.8    
39.3    
39.7    
40.2    
40.6    
41.1    
41.6    
42.0    
42.5    
42.9    
43.4    
43.8    
44.3    
44.7    
45.2    
45.7    
46.1    
46.6    
47.0    
47.5    
47.9    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.1    
52.5    
53.0    
53.4    
53.9    
54.3    
54.8    
55.3    
55.7    
56.2    
56.6    
57.1    
57.5    
58.0    
58.4    
58.9    
59.4    
59.8    
60.3    
60.7    
61.2    
61.6    
62.1    
62.6    
63.0    
63.5    
63.9    
64.4    
64.8    
65.3    
65.8    
66.2    
66.7    
67.1    
67.6    
68.0    
68.5    
68.9    
69.4    
69.9    
70.3    
70.8    
71.2    
71.7    
72.1    
72.6    
73.1    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.3    
76.7    
77.2    
77.6    
78.1    
78.5    
79.0    
79.5    
79.9    
80.4    
80.8    
81.3    
81.7    
82.2    
82.6    
83.1    
83.6    
84.0    
84.5    
84.9    
85.4    
85.8    
86.3    
86.8    
87.2    
87.7    
88.1    
88.6    
89.0    
89.5    
90.0    
90.4    
90.9    
91.3    
91.8    
92.2    
92.7    
93.2    
93.6    
94.1    
94.5    
95.0    
95.4    
95.9    
96.3    
96.8    
97.3    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 24467, rend_intergenic: 19937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30321, rend_intergenic: 29464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39791, rend_intergenic: 31178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45402, rend_intergenic: 42419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52578, rend_intergenic: 45613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55856, rend_intergenic: 54028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66361, rend_intergenic: 58554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78524, rend_intergenic: 68978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88664, rend_intergenic: 87105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96971, rend_intergenic: 89008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100092, rend_intergenic: 97385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113919, rend_intergenic: 105630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118074, rend_intergenic: 115248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120242, rend_intergenic: 119559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121905, rend_intergenic: 120246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support