-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2535, 2645
Sorry, prediction GlimmerHMM_glimmerT_61065-T1 fails validation.
(ATG)	 TC	425-447	GT	CTG
(GTA)	 AG	546-651	GT	TGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered GlimmerHMM_glimmerT_61065-T1, initial, 425, 447
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 546, 651
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 904, 1017
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 1366, 1528
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 1644, 1709
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 1819, 1891
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 2039, 2123
-recovered GlimmerHMM_glimmerT_61065-T1, internal, 2535, 2645
Couldn't classify 2535, 2645
Sorry, prediction snap_scaffold_1295-snap.1-T1 fails validation.
(ATG)	 TA	10-74	GT	AGG
(GTT)	 AG	361-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TTA)	 AG	1351-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered snap_scaffold_1295-snap.1-T1, initial, 10, 74
-recovered snap_scaffold_1295-snap.1-T1, internal, 361, 447
-recovered snap_scaffold_1295-snap.1-T1, internal, 546, 684
-recovered snap_scaffold_1295-snap.1-T1, internal, 904, 1017
-recovered snap_scaffold_1295-snap.1-T1, internal, 1351, 1528
-recovered snap_scaffold_1295-snap.1-T1, internal, 1644, 1709
-recovered snap_scaffold_1295-snap.1-T1, internal, 1819, 1891
-recovered snap_scaffold_1295-snap.1-T1, internal, 2039, 2123
-recovered snap_scaffold_1295-snap.1-T1, internal, 2535, 2645
Couldn't classify 1, 74
Couldn't classify 2535, 2645
Sorry, prediction Augustus_model.g40434.t1 fails validation.
(GAT)	 CA	1-74	GT	AGG
(GTT)	 AG	361-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered Augustus_model.g40434.t1, internal, 361, 447
-recovered Augustus_model.g40434.t1, internal, 546, 684
-recovered Augustus_model.g40434.t1, internal, 904, 1017
-recovered Augustus_model.g40434.t1, internal, 1366, 1528
-recovered Augustus_model.g40434.t1, internal, 1644, 1709
-recovered Augustus_model.g40434.t1, internal, 1819, 1891
-recovered Augustus_model.g40434.t1, internal, 2039, 2123
-recovered Augustus_model.g40434.t1, internal, 2535, 2645
Couldn't classify 2535, 2645
Sorry, prediction pasa_asmbl_9291.p1 fails validation.
(ATG)	 TC	425-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered pasa_asmbl_9291.p1, initial, 425, 447
-recovered pasa_asmbl_9291.p1, internal, 546, 684
-recovered pasa_asmbl_9291.p1, internal, 904, 1017
-recovered pasa_asmbl_9291.p1, internal, 1366, 1528
-recovered pasa_asmbl_9291.p1, internal, 1644, 1709
-recovered pasa_asmbl_9291.p1, internal, 1819, 1891
-recovered pasa_asmbl_9291.p1, internal, 2039, 2123
-recovered pasa_asmbl_9291.p1, internal, 2535, 2645

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2741
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support