-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1290

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1818, 1971
Sorry, prediction GlimmerHMM_glimmerT_61063-T1 fails validation.
(ATG)	 AC	388-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
-recovered GlimmerHMM_glimmerT_61063-T1, initial, 388, 512
-recovered GlimmerHMM_glimmerT_61063-T1, internal, 1299, 1428
-recovered GlimmerHMM_glimmerT_61063-T1, internal, 1818, 1971
Couldn't classify 384, 512
Sorry, prediction Augustus_model.g40433.t1 fails validation.
(CTA)	 AG	384-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
(TTA)	 AG	2379-2500	AT	AGA
-recovered Augustus_model.g40433.t1, terminal, 2379, 2500
-recovered Augustus_model.g40433.t1, internal, 384, 512
-recovered Augustus_model.g40433.t1, internal, 1299, 1428
-recovered Augustus_model.g40433.t1, internal, 1818, 1971
Couldn't classify 2379, 2469
Sorry, prediction snap_scaffold_1290-snap.1-T1 fails validation.
(ATG)	 CG	205-290	GT	CGG
(CTA)	 AG	384-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
(TTA)	 AG	2379-2469	GT	GGG
-recovered snap_scaffold_1290-snap.1-T1, initial, 205, 290
-recovered snap_scaffold_1290-snap.1-T1, internal, 384, 512
-recovered snap_scaffold_1290-snap.1-T1, internal, 1299, 1428
-recovered snap_scaffold_1290-snap.1-T1, internal, 1818, 1971
-recovered snap_scaffold_1290-snap.1-T1, internal, 2379, 2469

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1290-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2748
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support