-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1288

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1983, 2145
Couldn't classify 2394, 2539
Sorry, prediction pasa_asmbl_9290.p1 fails validation.
(GAT)	 CA	1983-2145	GT	AGG
(GGA)	 AG	2394-2539	AT	AGA
Couldn't classify 170, 198
Couldn't classify 2394, 2566
Sorry, prediction snap_scaffold_1288-snap.1-T1 fails validation.
(AGC)	 AG	170-198	GT	TGG
(ATG)	 AG	1984-2145	GT	AGG
(GGA)	 AG	2394-2566	GT	CGG
-recovered snap_scaffold_1288-snap.1-T1, initial, 1984, 2145
-recovered snap_scaffold_1288-snap.1-T1, internal, 170, 198
-recovered snap_scaffold_1288-snap.1-T1, internal, 1984, 2145
-recovered snap_scaffold_1288-snap.1-T1, internal, 2394, 2566
Valid prediction for GlimmerHMM_glimmerT_61061-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61061-T1 2394-2611-terminal-1 is invalid.
Couldn't classify 2394, 2566
Sorry, prediction Augustus_model.g40432.t1 fails validation.
(ATG)	 AG	1984-2145	GT	AGG
(GGA)	 AG	2394-2566	GT	CGG
-recovered Augustus_model.g40432.t1, initial, 1984, 2145
-recovered Augustus_model.g40432.t1, internal, 1984, 2145
-recovered Augustus_model.g40432.t1, internal, 2394, 2566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2752
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support