-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1278

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2155, 2307
Couldn't classify 2460, 2591
Sorry, prediction snap_scaffold_1278-snap.1-T1 fails validation.
(GAG)	 AG	2155-2307	GT	AGG
(GAG)	 AG	2460-2591	GT	TGG
-recovered snap_scaffold_1278-snap.1-T1, internal, 2155, 2307
-recovered snap_scaffold_1278-snap.1-T1, internal, 2460, 2591
Couldn't classify 2155, 2254
Sorry, prediction GlimmerHMM_glimmerT_61058-T1 fails validation.
(GAG)	 AG	2155-2254	GT	CGG
(GAG)	 AG	2460-2518	CG	GAC
-recovered GlimmerHMM_glimmerT_61058-T1, terminal, 2460, 2518
-recovered GlimmerHMM_glimmerT_61058-T1, internal, 2155, 2254
Couldn't classify 2460, 2591
Sorry, prediction Augustus_model.g40428.t1 fails validation.
(ATG)	 GA	1054-1095	GT	GTG
(GAG)	 AG	2155-2307	GT	AGG
(GAG)	 AG	2460-2591	GT	TGG
-recovered Augustus_model.g40428.t1, initial, 1054, 1095
-recovered Augustus_model.g40428.t1, internal, 2155, 2307
-recovered Augustus_model.g40428.t1, internal, 2460, 2591

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2787
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support