-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2174, 2328
Sorry, prediction snap_scaffold_1267-snap.1-T1 fails validation.
(ATG)	 AG	707-713	GT	TGG
(AGA)	 AG	1976-2111	GT	AGG
(AAG)	 AG	2174-2328	GT	AGG
-recovered snap_scaffold_1267-snap.1-T1, initial, 707, 713
-recovered snap_scaffold_1267-snap.1-T1, internal, 707, 713
-recovered snap_scaffold_1267-snap.1-T1, internal, 1976, 2111
-recovered snap_scaffold_1267-snap.1-T1, internal, 2174, 2328
Valid prediction for snap_scaffold_1267-snap.2-T1
add_exon() Sorry, snap_scaffold_1267-snap.2-T1 331-638-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2840
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support