-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1263

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 436, 607
Couldn't classify 2517, 2651
Sorry, prediction snap_scaffold_1263-snap.1-T1 fails validation.
(CCC)	 AG	436-607	GT	TGG
(GAT)	 AG	2047-2167	GT	TGG
(CGC)	 AG	2517-2651	GT	GTG
-recovered snap_scaffold_1263-snap.1-T1, internal, 436, 607
-recovered snap_scaffold_1263-snap.1-T1, internal, 2047, 2167
-recovered snap_scaffold_1263-snap.1-T1, internal, 2517, 2651

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 787, 873
Sorry, prediction pasa_asmbl_9279.p1 fails validation.
(ATG)	 TC	173-348	GT	AGG
(GAG)	 AG	621-687	GT	CCG
(GTG)	 AG	787-873	GG	ACG
-recovered pasa_asmbl_9279.p1, initial, 173, 348
-recovered pasa_asmbl_9279.p1, internal, 621, 687
Valid prediction for GlimmerHMM_glimmerT_61051-T1
Valid prediction for Augustus_model.g40424.t1
Couldn't classify 2097, 2273
Sorry, prediction snap_scaffold_1263-snap.2-T1 fails validation.
(ATG)	 GG	998-1080	GT	AGG
(AGG)	 AG	2097-2273	GT	TAG
-recovered snap_scaffold_1263-snap.2-T1, initial, 998, 1080
-recovered snap_scaffold_1263-snap.2-T1, internal, 2097, 2273

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2651, rend_intergenic: 569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2841
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2651, rend_intergenic: 569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support