-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1262

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 185, 307
Couldn't classify 2199, 2271
Sorry, prediction snap_scaffold_1262-snap.2-T1 fails validation.
(CAG)	 AG	185-307	GT	ATG
(GTA)	 AG	1973-2104	GT	CAG
(GTT)	 AG	2199-2271	GT	AGG
-recovered snap_scaffold_1262-snap.2-T1, internal, 185, 307
-recovered snap_scaffold_1262-snap.2-T1, internal, 1973, 2104
-recovered snap_scaffold_1262-snap.2-T1, internal, 2199, 2271
Valid prediction for Augustus_model.g40423.t1
Valid prediction for GlimmerHMM_glimmerT_61050-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61050-T1 1973-2135-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2577, 2667
Sorry, prediction snap_scaffold_1262-snap.1-T1 fails validation.
(ATG)	 TG	591-617	GT	TGG
(GAG)	 AG	768-851	GT	AGG
(GTG)	 AG	2379-2470	GT	AGG
(GCT)	 AG	2577-2667	GT	AGG
-recovered snap_scaffold_1262-snap.1-T1, initial, 591, 617
-recovered snap_scaffold_1262-snap.1-T1, internal, 768, 851
-recovered snap_scaffold_1262-snap.1-T1, internal, 2379, 2470
-recovered snap_scaffold_1262-snap.1-T1, internal, 2577, 2667
Couldn't classify 2577, 2676
Sorry, prediction Augustus_model.g40422.t1 fails validation.
(ATG)	 CG	1996-2037	GT	AAG
(GTG)	 AG	2379-2470	GT	AGG
(GCT)	 AG	2577-2676	GT	AGG
-recovered Augustus_model.g40422.t1, initial, 1996, 2037
-recovered Augustus_model.g40422.t1, internal, 2379, 2470
-recovered Augustus_model.g40422.t1, internal, 2577, 2676

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2255, rend_intergenic: 185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2845
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2255, rend_intergenic: 185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support