-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1260

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40421.t1
add_exon() Sorry, Augustus_model.g40421.t1 631-692-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 321, 408
Sorry, prediction GlimmerHMM_glimmerT_61048-T1 fails validation.
(CCC)	 AG	321-408	GT	ACG
(ACC)	 AG	2368-2472	AG	AGA
-recovered GlimmerHMM_glimmerT_61048-T1, terminal, 2368, 2472
-recovered GlimmerHMM_glimmerT_61048-T1, internal, 321, 408
Couldn't classify 321, 408
Sorry, prediction snap_scaffold_1260-snap.1-T1 fails validation.
(CCC)	 AG	321-408	GT	ACG
(ACC)	 AG	2368-2472	AG	AGA
-recovered snap_scaffold_1260-snap.1-T1, terminal, 2368, 2472
-recovered snap_scaffold_1260-snap.1-T1, internal, 321, 408

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2845
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support