-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 515, 594
Couldn't classify 1918, 1929
Sorry, prediction snap_scaffold_1255-snap.1-T1 fails validation.
(GTT)	 AG	515-594	GT	GTG
(GGG)	 AG	1288-1744	GT	CTG
(TGG)	 AG	1918-1929	GT	CGG
-recovered snap_scaffold_1255-snap.1-T1, internal, 515, 594
-recovered snap_scaffold_1255-snap.1-T1, internal, 1288, 1744
-recovered snap_scaffold_1255-snap.1-T1, internal, 1918, 1929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2851
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support