-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1253

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1422, 1548
Sorry, prediction GlimmerHMM_glimmerT_61045-T1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2578	TG	AGT
-recovered GlimmerHMM_glimmerT_61045-T1, terminal, 2454, 2578
-recovered GlimmerHMM_glimmerT_61045-T1, internal, 1422, 1548
Couldn't classify 1422, 1548
Couldn't classify 2799, 2854
Sorry, prediction Augustus_model.g40419.t1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2541	GT	AGG
(CAT)	 AG	2799-2854		CC
-recovered Augustus_model.g40419.t1, internal, 1422, 1548
-recovered Augustus_model.g40419.t1, internal, 2454, 2541
Couldn't classify 1422, 1548
Couldn't classify 2656, 2671
Sorry, prediction snap_scaffold_1253-snap.1-T1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2541	GT	AGG
(GAG)	 AG	2656-2671	GT	TGG
-recovered snap_scaffold_1253-snap.1-T1, internal, 1422, 1548
-recovered snap_scaffold_1253-snap.1-T1, internal, 2454, 2541
-recovered snap_scaffold_1253-snap.1-T1, internal, 2656, 2671

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2854
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support