-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_125

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 653, 822
Couldn't classify 9785, 9932
Sorry, prediction snap_scaffold_125-snap.1-T1 fails validation.
(GTA)	 AG	653-822	GT	AAG
(AAG)	 AG	1856-1983	GT	AGG
(CAG)	 AG	9785-9932	GT	GAG
-recovered snap_scaffold_125-snap.1-T1, internal, 653, 822
-recovered snap_scaffold_125-snap.1-T1, internal, 1856, 1983
-recovered snap_scaffold_125-snap.1-T1, internal, 9785, 9932
Couldn't classify 14011, 14070
Sorry, prediction GlimmerHMM_glimmerT_59843-T1 fails validation.
(ATG)	 AC	658-791	GT	GAG
(GGC)	 AG	1819-1960	GT	AGG
(GTG)	 AG	14011-14070	GT	TGG
-recovered GlimmerHMM_glimmerT_59843-T1, initial, 658, 791
-recovered GlimmerHMM_glimmerT_59843-T1, internal, 1819, 1960
-recovered GlimmerHMM_glimmerT_59843-T1, internal, 14011, 14070
Couldn't classify 653, 791
Sorry, prediction Augustus_model.g39644.t1 fails validation.
(GTA)	 AG	653-791	GT	GAG
(GGC)	 AG	1819-1999	AG	GAA
add_exon() Sorry, Augustus_model.g39644.t1 653-791-terminal-3 is invalid.
-recovered Augustus_model.g39644.t1, terminal, 653, 791
-recovered Augustus_model.g39644.t1, terminal, 1819, 1999
-recovered Augustus_model.g39644.t1, internal, 653, 791

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 14269
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 2000 - 14269
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support