-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1245

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40415.t1
Couldn't classify 1771, 1904
Sorry, prediction snap_scaffold_1245-snap.1-T1 fails validation.
(ATG)	 TA	357-433	GT	AGG
(GTT)	 AG	1044-1218	GT	TAG
(AGT)	 AG	1771-1904	GT	AAG
-recovered snap_scaffold_1245-snap.1-T1, initial, 357, 433
-recovered snap_scaffold_1245-snap.1-T1, internal, 1044, 1218
-recovered snap_scaffold_1245-snap.1-T1, internal, 1771, 1904
Couldn't classify 1044, 1218
Sorry, prediction GlimmerHMM_glimmerT_61041-T1 fails validation.
(GTT)	 AG	1044-1218	GT	TAG
(AGT)	 AG	1771-1929	TG	GAT
-recovered GlimmerHMM_glimmerT_61041-T1, terminal, 1771, 1929
-recovered GlimmerHMM_glimmerT_61041-T1, internal, 1044, 1218

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2866
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support