-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1244

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 977, 1085
Sorry, prediction GlimmerHMM_glimmerT_61040-T1 fails validation.
(ATG)	 GG	184-243	GT	GGG
(ATG)	 AG	977-1085	GT	ACG
-recovered GlimmerHMM_glimmerT_61040-T1, initial, 184, 243
-recovered GlimmerHMM_glimmerT_61040-T1, initial, 977, 1085
-recovered GlimmerHMM_glimmerT_61040-T1, internal, 977, 1085
Couldn't classify 139, 243
Couldn't classify 977, 1085
Sorry, prediction snap_scaffold_1244-snap.1-T1 fails validation.
(AAC)	 AG	139-243	GT	GGG
(ATG)	 AG	977-1085	GT	ACG
-recovered snap_scaffold_1244-snap.1-T1, initial, 977, 1085
-recovered snap_scaffold_1244-snap.1-T1, internal, 139, 243
-recovered snap_scaffold_1244-snap.1-T1, internal, 977, 1085
Couldn't classify 139, 243
Sorry, prediction Augustus_model.g40414.t1 fails validation.
(AAC)	 AG	139-243	GT	GGG
(ATG)	 AG	977-1117	TC	AGT
-recovered Augustus_model.g40414.t1, terminal, 977, 1117
-recovered Augustus_model.g40414.t1, internal, 139, 243

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2872
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support