-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1241

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40412.t1
Couldn't classify 1003, 1071
Couldn't classify 1993, 2132
Sorry, prediction snap_scaffold_1241-snap.1-T1 fails validation.
(GGA)	 AG	1003-1071	GT	GGG
(GCT)	 AG	1335-1454	GT	ATG
(CCC)	 AG	1720-1814	GT	AAG
(TGC)	 AG	1993-2132	GT	CGG
-recovered snap_scaffold_1241-snap.1-T1, internal, 1003, 1071
-recovered snap_scaffold_1241-snap.1-T1, internal, 1335, 1454
-recovered snap_scaffold_1241-snap.1-T1, internal, 1720, 1814
-recovered snap_scaffold_1241-snap.1-T1, internal, 1993, 2132

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2877
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support